UFO03078.5prime Sequence
1158 bp (1024 high quality bases) assembled on 2009-01-24
> UFO03078.5prime
CAGTCGACATGTACAACGACGAGGTGCGAACGCCGCAAGCCCTCAAGAAT
CGATACATTACAAATGTGAACGGATTGAAGTGCCGGGCGCGCCGTAACAG
CCACTCGAACAGCAGCAACTCGTCGGCGGCGTCGGCAACGCCAACGAATG
GCGGCAAAGAAAATGGAAAATACAGCCCCCAGATGTCGGGAAATGTGTGC
ACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGAATCCCTTCGAAGGAGC
GATGGCCGATCGTTTACACCTGCCACTGATCGCCAGCCCCTCACTTTTCC
GCTCGCGGACACCCCAACTCTCGTCCACCCAGTTCGAGTGGAACATTGAC
GAGGTCTCCCAACTAAAACCCGCCGACGTGGAGCCCCATGAAACCCAGTT
CCACGATTCCCCCGATCCCGAGCAGGAATCCAAGGCCCAGTTGGCCATCA
GTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAGTCCGGTGGATTGCCCA
TTGCGAAAACAGCGCATAATACTCAATTGCAGCGAGGACAACACTCCCAT
ATCGAATAAGTCGCGAAGGATGCGGGATTGCGAGGTGCAAACGGAACTTA
CTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGATGCCCTGCGTCCGTAC
TTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCAGGAGCAAGTCAAGTGG
TGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTCTTCGATCTGC
ACAATGTCATTGTTTTGGGCGAACAGGACACGGCAGAGCCATCGAGGTCC
ATGGTGGGCTCCAGTCCGCAGGGCAAGCAAACAATGTTCGCTGGCAGACT
GTCGGATTCCGCATCCCGGGGAAAGTAGCTTCGGCTGCCTTTCACCCATT
AGAAACCTATGCGGACTGCCGCCTGGCACGCCCGATATGGTACTTGCTCG
GGAAAGAGAAACTTCTAATGCACGAGCTGGAGCTGCCGTCGCCCATTGCC
CCGTCGGAGCATCTCAGTCGGAGATTGTGCCCTCAGTAAGAGATCAGCGT
TACGGAACACCCGACCGTTGTCGAGCGCCACGGCAATGAAGTTCACGCGA
ACGGAATCTCCGCCCAATGGGCCGGCGAACTGGACATTCGAATGCCACAA
TAATCAAG
UFO03078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 96..1252 | 9..1156 | 5165 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623120..18623864 | 284..1027 | 3580 | 99.6 | Plus |
| 3L | 28110227 | 3L | 18622787..18623064 | 9..286 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:14 has no hits.
UFO03078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:40 Download gff for
UFO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 94..1203 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:42 Download gff for
UFO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1205 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:20 Download gff for
UFO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1205 | 9..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:20 Download gff for
UFO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18622787..18623064 | 9..286 | 100 | -> | Plus |
| 3L | 18623123..18623954 | 287..1111 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:42 Download gff for
UFO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18615887..18616164 | 9..286 | 100 | -> | Plus |
| arm_3L | 18616223..18617054 | 287..1111 | 97 | | Plus |
