UFO03079.5prime Sequence
1115 bp (983 high quality bases) assembled on 2010-02-19
> UFO03079.5prime
CAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCCAGAGTCAG
GCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAGAAGATAGT
CTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCTGGATCTCA
ACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACTTGATCCTC
ACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCCAAAGTGCA
TTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGTTTATATTC
AGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAATTGGCACA
AACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTGTCCCACCC
AACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGAGTCGATCG
GGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCAAGCTGGGA
TCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGCACCTGCCA
GCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGGGGCGCGAC
CCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAGCCAAGATT
ATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGACATCGTGGA
CAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGGCGGCGACC
TGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACATCTCGAAG
CTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACACGATCGGGG
CATCACCCATCGTGACCTTAAGCCTGACAATGTTTTTGCTGGAGACCAAT
GACGAGAGACCCTACTGATGGTCTCCGATTTCGGGCTGAGTAGTTTGTGC
AGAAGACTCGGTTATGCGCACGCTCTGTGCACACTCTCTACGTGACCTGA
GTGCTGATACCGGCGCGAAAGCTACACAGAGTGACATTGAGCTGGGAGTG
GTCTTATTACTTGCTGATGCACTCTGCTTCCGGACAGATACGAACCGGGC
GGCCAGCAATAAGAA
UFO03079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lok-RC | 2163 | CG10895-RC | 381..1395 | 9..1015 | 4810 | 98.8 | Plus |
| lok-RB | 2105 | CG10895-RB | 320..1334 | 9..1015 | 4810 | 98.8 | Plus |
| lok-RD | 2310 | CG10895-RD | 381..1222 | 9..850 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20062732..20063172 | 410..850 | 2205 | 100 | Plus |
| 2L | 23513712 | 2L | 20062147..20062306 | 144..303 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 20061877..20062012 | 9..144 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 20062542..20062653 | 300..411 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 20063377..20063509 | 849..979 | 455 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:18 has no hits.
UFO03079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:00 Download gff for
UFO03079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RC | 393..1399 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:46 Download gff for
UFO03079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RB | 312..1318 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:39 Download gff for
UFO03079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RB | 312..1318 | 1..1001 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:39 Download gff for
UFO03079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20062148..20062305 | 145..302 | 100 | -> | Plus |
| 2L | 20062545..20062653 | 303..411 | 100 | -> | Plus |
| 2L | 20061869..20062012 | 1..144 | 97 | -> | Plus |
| 2L | 20062734..20063171 | 412..849 | 100 | -> | Plus |
| 2L | 20063378..20063509 | 850..979 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:46 Download gff for
UFO03079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20061869..20062012 | 1..144 | 97 | -> | Plus |
| arm_2L | 20062148..20062305 | 145..302 | 100 | -> | Plus |
| arm_2L | 20062545..20062653 | 303..411 | 100 | -> | Plus |
| arm_2L | 20062734..20063171 | 412..849 | 100 | -> | Plus |
| arm_2L | 20063378..20063509 | 850..979 | 96 | == | Plus |
