UFO03080.5prime Sequence
1083 bp (965 high quality bases) assembled on 2009-01-24
> UFO03080.5prime
CAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCATTTGTCGTG
GGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTGGAGCTGAC
GCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCATCTGGGTCG
TGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGGTGCCCGAG
TACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTGGGCTCCGT
GAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGTACGTGGCT
TTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCACGGACTAC
AATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTGGCGGAGGT
CAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATCGTCTTCCG
GCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCACCGAGGAC
AACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTGGTGGAATT
CTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGAATGGGCCA
AGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCCTGGATGCC
ACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGGTATCCTAC
CATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGCCCAGGAGT
ATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGGGCCAGTGACAAG
CATGTGGCCAATGTGCCAGCACCCGAACTCATCGAGATTATCAATGAATC
GACTTTTGAAACTGCCTGCGAAGGAAAGCCATTGTGCGTCGTGTCCGTTC
TGCACACATTCTCGACTGCGATGCCAAGTGCCGCAACAGTTCTCGACCAT
TGCGCACCCTGGGCGAGAGTTCAGGCAGAGCATGGCTGGGCTGGCAGAAG
TGGCAGCAGTGCCTGAGATCCTCGATGGGCGATCGCTATCGCATGCTGTG
GTCACTCAAAGAGATGATTCTCGCTGTCTCAAG
UFO03080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1198 | 9..1010 | 4745 | 98.6 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1198 | 9..1010 | 4745 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355520..16356471 | 968..21 | 4565 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:43 has no hits.
UFO03080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:55 Download gff for
UFO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 204..1193 | 2..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:36 Download gff for
UFO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1167 | 2..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:29 Download gff for
UFO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1167 | 2..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:29 Download gff for
UFO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355500..16356470 | 22..985 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:36 Download gff for
UFO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355500..16356470 | 22..985 | 99 | <- | Minus |
