Clone UFO03082 Report

Search the DGRC for UFO03082

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:82
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3362-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03082.5prime Sequence

417 bp (385 high quality bases) assembled on 2009-02-18

> UFO03082.5prime
CAGTCGACATGTCGCGCCATCCGAGCGATAGAAAGGTGTACGTGGGCGAT
CTGGGCAACAATGCCCGGAAGAACGACCTGGAGTATGTATTTGGAGCGTA
CGGCAGTTTGCGCAGCGTCTGGATAGCCCGCAATCCGCCGGGCTTCGCCT
TCGTGGAGTTTGAGAGTGCCCGCGATGCGGCGGATGCGGTGCGCGGATTG
GACGGACGGACGGTTTGCGGGCGCCGAGCCCGTGTGGAATTGTCCACCGG
AAAGTATGCTAGGTCCGGCGGTGGTGGTGGCGGAGGTGGTGGAGGCGGTG
GTGGTGGAGGAACCTGACTTCTGTGGTGAGGCGGCGGTGGTGGTGGGAAA
AAAAAATATTACTAGCGCTGAGGAAAGTAGCATTTTATTTGCTGTTTTCT
GTATTGGACTGCTGTTC

UFO03082.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
x16-RB 1784 CG10203-RB 269..571 9..311 1515 100 Plus
x16-RA 1707 CG10203-RA 269..571 9..311 1515 100 Plus
Rbp1-like-RC 1456 CG1987-RC 298..354 108..164 180 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6919640..6919942 311..9 1515 100 Minus
X 23542271 X 13384524..13384580 164..108 180 87.7 Minus
Blast to na_te.dros performed on 2014-11-28 21:13:50 has no hits.

UFO03082.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:49 Download gff for UFO03082.5prime
Subject Subject Range Query Range Percent Splice Strand
xl6-RA 328..679 1..355 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:02 Download gff for UFO03082.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..615 1..355 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:57 Download gff for UFO03082.5prime
Subject Subject Range Query Range Percent Splice Strand
x16-RA 264..615 1..355 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:57 Download gff for UFO03082.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6919596..6919947 1..355 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:02 Download gff for UFO03082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6919596..6919947 1..355 94   Minus