UFO03083.5prime Sequence
1113 bp (999 high quality bases) assembled on 2009-01-24
> UFO03083.5prime
CAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGCAGCACCTG
TTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATTCACGTTTT
CCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAAACGCGATT
ACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTCCCGAGGAA
TTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTCGAACAGGA
TTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCATGGCGAATT
TCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGGATGCCGCA
CAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCTTTGGGACT
ACGGGCTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAAGGACAAGG
AGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAGAGTGACCGTG
GAAACCCAGCCCTTTGATCTCGAGGCTTTTATGAATGAGCACAAGCAATT
GCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTTTTTTGCTG
ATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGGCACGGGAT
GTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCGAAGGCATC
AAGCCCAAAAGAAGCTCCTCGCATTAGAAGCGCAAGGCTCTTGAAATCAA
TACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCAATCCGCTTG
TCGAGTACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTAAATGTAATC
TTAAAAGTAGAGCTAGCGCCAATGGACACCAAGAATGATCTCACTGATGA
TGACGAAGAGTCATCCACATCTTCCGGGCTTTCCCAAGATGTCTGGCCGA
CACTAACCAAATTTAATCACCGTCGGAAATGTGTATATGACCTTGCATCT
CAGACAGTATGCTCTCTGAGATGAGGATGCTTTCTTCTAAGATGGTATAC
TTCTTCTAAATAGAGATGCCTCCTCTAGAGGAAGGATGCCTTCTCTCTAA
AGAATGAGTGAAT
UFO03083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32756-RB | 2397 | CG32756-RB | 80..1188 | 9..1103 | 4975 | 97.6 | Plus |
| CG32756-RA | 1895 | CG32756-RA | 80..1188 | 9..1103 | 4975 | 97.6 | Plus |
| CG12728-RB | 2374 | CG12728-RB | 78..1158 | 9..1077 | 4780 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5946457..5946693 | 491..727 | 1185 | 100 | Plus |
| X | 23542271 | X | 5943375..5943611 | 491..727 | 1140 | 98.7 | Plus |
| X | 23542271 | X | 5946755..5947102 | 727..1062 | 1130 | 93.7 | Plus |
| X | 23542271 | X | 5943673..5943952 | 727..1003 | 1090 | 94.3 | Plus |
| X | 23542271 | X | 5942903..5943088 | 168..353 | 930 | 100 | Plus |
| X | 23542271 | X | 5945981..5946166 | 168..353 | 930 | 100 | Plus |
| X | 23542271 | X | 5942683..5942841 | 9..167 | 795 | 100 | Plus |
| X | 23542271 | X | 5945761..5945919 | 9..167 | 795 | 100 | Plus |
| X | 23542271 | X | 5946231..5946371 | 352..492 | 705 | 100 | Plus |
| X | 23542271 | X | 5943153..5943290 | 352..489 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:21 has no hits.
UFO03083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:48 Download gff for
UFO03083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 45..1138 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:45 Download gff for
UFO03083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 73..1166 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:22 Download gff for
UFO03083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32756-RA | 73..1166 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:22 Download gff for
UFO03083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5945754..5945919 | 1..167 | 97 | -> | Plus |
| X | 5945981..5946166 | 168..353 | 100 | -> | Plus |
| X | 5946233..5946371 | 354..492 | 100 | -> | Plus |
| X | 5946459..5946693 | 493..726 | 99 | -> | Plus |
| X | 5946755..5947130 | 727..1087 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:45 Download gff for
UFO03083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5839787..5839952 | 1..167 | 97 | -> | Plus |
| arm_X | 5840014..5840199 | 168..353 | 100 | -> | Plus |
| arm_X | 5840266..5840404 | 354..492 | 100 | -> | Plus |
| arm_X | 5840492..5840726 | 493..726 | 99 | -> | Plus |
| arm_X | 5840788..5841163 | 727..1087 | 93 | -> | Plus |
