UFO03085.5prime Sequence
1105 bp (982 high quality bases) assembled on 2009-02-18
> UFO03085.5prime
CAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGGTTCCGGAA
TCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACGGCGACCAT
TGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAAAGCCAAGA
ATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAACTGAAGAAG
CTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATGCCACTTAA
TGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCGACGGGAGC
AGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCGAGGAGTGG
CATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCAGCCGCCAA
GGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAAGGAACACC
CCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCACAAAACTG
GATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCCTTGGGCAA
GGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGAGGATCCGG
ATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCACCGCCTCCC
ACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTGCCACCTGC
GACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCATCTACACCA
ACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGAGGACGCTG
CGCAAGGCCAAGACCGATCTGGAGCAGCAGACGCTGTGCTGGAACAGCAC
GTAGATATACGAAAGCCGGGTACGCCAAGGTGATGGGCGAGGTAACTGAG
CTCATGGAGGAGACCAACGCCTGAGACCTATTTGCGCCGCCTTGCGCCAG
AAACTGTCGCAGCTCTCGGCGGATCTCGATGCCACACTGAGCCAGTGTTC
CAGCGTGCAACATTGACAGGTACATCCGGCACTTAGCCGGCTCGTCACTC
AGCCAGCCACCGTCACTTGAATAAGCACGAAGAGCCCTGCTATTGAACTC
AGTAG
UFO03085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmg-2-RA | 1347 | CG9418-RA | 99..1184 | 9..1080 | 4955 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21146764..21147431 | 413..1068 | 2610 | 96.9 | Plus |
| 2R | 25286936 | 2R | 21146301..21146704 | 9..412 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:11:30 has no hits.
UFO03085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:51 Download gff for
UFO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9418-RA | 89..1173 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:30 Download gff for
UFO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9418-RA | 94..1178 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:42 Download gff for
UFO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmg-2-RA | 94..1178 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:42 Download gff for
UFO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21146296..21146704 | 1..412 | 99 | -> | Plus |
| 2R | 21146764..21147439 | 413..1075 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:30 Download gff for
UFO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17033801..17034209 | 1..412 | 99 | -> | Plus |
| arm_2R | 17034269..17034944 | 413..1075 | 96 | | Plus |
