Clone UFO03088 Report

Search the DGRC for UFO03088

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:88
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11284-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03088.5prime Sequence

409 bp (353 high quality bases) assembled on 2009-02-18

> UFO03088.5prime
CAGTCGACATGGCTACGGACACGGTGTCCAACGGCGAGAACTTCGCCCAG
CACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACATGCGACGT
GAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGAGATGGAGC
GATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAACTAGCGGA
GCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGACAACCGTG
GAGCGTGTTCCAGCGGGTGCACCGCAATCGACAGGCCCGTCAGCGCCAGC
GCACCAGGAAGCGTCCGGCTTCTCCTGCCCCCCACCAACTGTAGTCCTAG
GGTAACAACTGCTCCTCCTCCGCTGCAGCAACTCCGTCCGTAACTGCTGC
CAAATCCAG

UFO03088.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4813-RA 1531 CG4813-RA 146..546 9..406 1795 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22725869..22726269 406..9 1720 97 Minus
Blast to na_te.dros performed on 2014-11-28 19:05:08 has no hits.

UFO03088.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:50 Download gff for UFO03088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 626..1035 1..409 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:54 Download gff for UFO03088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 108..517 1..409 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:14 Download gff for UFO03088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4813-RA 140..549 1..409 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:14 Download gff for UFO03088.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22725866..22726273 1..409 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:54 Download gff for UFO03088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18551588..18551995 1..409 95   Minus