UFO03090.5prime Sequence
1128 bp (1009 high quality bases) assembled on 2009-01-24
> UFO03090.5prime
CAGTCGACATGCTTGAGACCGAGGTGCTGCAACAACCGAAGCTGAGTGGA
CCGGCTGCCAGTAGCGGCGGCGACTATGACTATCCGTATGTCTGCGGACT
GAGTCCGGCAATGAAGCTGGTGGCCAAGGAGGAGCTGCACGAGGACGAGA
ACATACGTCGGCAGGCGCTGGCCCAGTTCCGCGAGTGGATCGAGAAGCAT
CCGCATATCCGCAAGTGCCGCACCGATACCGTCTTCCTGCTGCGTTTTTT
GCGCACCAAAAAGTTCTCCGTACCATCCGCCTGCGAAATGCTCGAGCGCT
ATCTGACCATCCGGCAGCTGTTCCCGCAGTGGTTCAAGCAGCTGGACATC
AACGATCCGGCCATCAATGAGATCTTCGAGAATGGTTATCTGGTGCCGCT
GCCGCAGCGCGATTCCACCGGACGTCAGGTCATCTTCTCCGTGGCCGCCA
AGTTCGATCCGTACAAGTTCACTTCGGTGCAAATGGCGCGGGTGCACAGT
CTGGTCTGCGAGGCACTGCTGGATGATGAGGATTCTCAGGTGGCTGGATA
TGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGTTAGCCTCT
GGTCTCTGACCGACCTGCGCAGCATTGTCAAGTGCATCCAGAACTCGACG
CCGATGCGGCACAAGGAGACGCACTTCGTCAACATACCCCACTACGCCAA
TCGCATCATCGAGCTGGGCGTGTCCATGCTGAGCGATAAGCTTAAGAAGC
GAATCATTGTGCACAAGAATGTTGACATTTTGAAGACAAAGATCGATCCC
GCCATCCTGCCCAAGGAATATGGTGGCACCGTGCCCATTGCCGATATGAT
CGCCCAGTTCAAACAGAAGTTGCAGCAACGCCGGGCGGCATTCCTTGCAC
TCGACGACATGCAGATCGAGGTGACAAGATGCGGCCAATTTTGCTGGTAA
TGATATCGGCGACTCGATGCCGTGTCGTGGCCAGTTTAGAACTGGAGTGA
CGCAAGCTTTCTAGACATTCGTTGGCGCGCGGCCAGGTAGGTGTCTATCA
TATCATATCTAATCATATCCAACTAGCCTAGGAATCTGTCTGACTAGGTC
TGGATTCACAATAAAAGCCGGCGCTACG
UFO03090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10657-RA | 1524 | CG10657-RA | 207..1189 | 9..987 | 4785 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12492813..12493274 | 471..10 | 2295 | 99.8 | Minus |
| 3L | 28110227 | 3L | 12492458..12492753 | 761..466 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 12492165..12492397 | 987..759 | 955 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:02 has no hits.
UFO03090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:49 Download gff for
UFO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10657-RA | 189..1145 | 9..963 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:16 Download gff for
UFO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10657-RA | 207..1163 | 9..963 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:05 Download gff for
UFO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10657-RA | 207..1163 | 9..963 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:05 Download gff for
UFO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12492461..12492751 | 468..758 | 100 | <- | Minus |
| 3L | 12492191..12492397 | 759..963 | 98 | <- | Minus |
| 3L | 12492817..12493278 | 4..467 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:16 Download gff for
UFO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12485291..12485497 | 759..963 | 98 | <- | Minus |
| arm_3L | 12485561..12485851 | 468..758 | 100 | <- | Minus |
| arm_3L | 12485917..12486378 | 4..467 | 99 | | Minus |
