UFO03091.5prime Sequence
1090 bp (976 high quality bases) assembled on 2009-01-24
> UFO03091.5prime
CAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCGGGAATCTT
GACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAGAAGTACGG
TACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGTTCACATGG
AGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACGGTTATACG
CTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGGCGGGCGCC
CAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGACAAGACGC
GGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCGTCGTCGAA
TGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGTGTCGGTGA
TGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGATGGCCAGC
CGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGCCGGGCATG
GGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCATTGGTCGAA
AGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGAGCCGCCAT
CGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTCGTGACCCG
TATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGCATCATGGA
TGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGACTCACGCG
ATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACTTCCCACCG
CCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACCTTAAGCGG
CAGCCTGCGCTCCTGCAGCGTTTCTCGTGATACGACACTATGTTCAGCCG
GCGCTCGCCTCCGCCGCCGCGTAGCAGCATGGAATGAGTCGCTACGGCTC
GCCCACTCCACACGGTACGAGGACTTAGTCGCGATGCATTCGACGACGCA
TGATTTCGTCGCGCGGAATGCCCGGTCCATCGCCGCGGTCGCAAATTGCC
GCCCTACGCAGCTTTCTAGAACATCGTTGCGGCCGGTCAG
UFO03091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lark-RD | 1758 | CG8597-RD | 276..1332 | 8..1057 | 5045 | 99 | Plus |
| lark-RE | 2087 | CG8597-RE | 605..1661 | 8..1057 | 5045 | 99 | Plus |
| lark-RC | 1784 | CG8597-RC | 302..1358 | 8..1057 | 5045 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7340068..7340771 | 8..711 | 3520 | 100 | Plus |
| 3L | 28110227 | 3L | 7340875..7341114 | 710..947 | 1100 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7341352..7341444 | 947..1036 | 300 | 95.7 | Plus |
Blast to na_te.dros performed 2014-11-28 23:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 515..574 | 125 | 69.4 | Plus |
UFO03091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:48 Download gff for
UFO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 287..1350 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:56 Download gff for
UFO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 295..1358 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:21 Download gff for
UFO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lark-RC | 295..1358 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:21 Download gff for
UFO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7340061..7340770 | 1..710 | 99 | -> | Plus |
| 3L | 7340876..7341114 | 711..947 | 99 | -> | Plus |
| 3L | 7341353..7341467 | 948..1057 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:56 Download gff for
UFO03091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7333161..7333870 | 1..710 | 99 | -> | Plus |
| arm_3L | 7333976..7334214 | 711..947 | 99 | -> | Plus |
| arm_3L | 7334453..7334567 | 948..1057 | 92 | | Plus |
