UFO03092.5prime Sequence
972 bp (635 high quality bases) assembled on 2009-01-24
> UFO03092.5prime
CAGTCCACATGATGAGCAACTACGGCAACGTGATGGACTCCCCGAACTCA
TCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAAGACTCATC
CGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAACGATCATTC
ACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGGCAGAACTT
ACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCACACACTCAC
CAAGTTCAAGGAGAAAAAGTTCAAGGAGTCGCTGGCCTCGTTTCTGCAGA
ACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGAATAGCACG
CTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAGCTTCTTCC
GCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGGACCGCTGC
CGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAACACAAAAAC
AAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGACAGGAATC
CACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAAGCACAAGA
AGCAGACACGCCCTGAGGACGACAAGGAGCGCAAGAAGCGCAAAAAGGAG
AAAAAGCGTAAAAAGAAAACCAGAGCCCCGAACCGGGCGTGGGCTTGCTG
CCCGGAGGAGCGAGCTTGGGCGGAGCACGGGTGTAATGGGAGCCACTATT
CTGGGATCGCTGGGAGGAGGACCTGGAAGGACCGGGCTGTCCAGCCTTTA
TTGCCAGTATGGGACCTGCGTTGTGGGAACATGAATAGCTTCTCCTCATC
GATGCTGATGCAGCAGCACAGCTGATGCCCATGCAGCAACAGCAGATGTC
AGTGCGTCTTGCTGGGATCTGTGCTGGGCTCTAGTGCCGTCCAGTAGCTG
CGCTGACGAGGAGTGGTGGCGG
UFO03092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED19-RB | 1853 | CG5546-RB | 311..1284 | 9..972 | 4245 | 96.7 | Plus |
| MED19-RA | 1763 | CG5546-RA | 311..1284 | 9..972 | 4245 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17845754..17846191 | 446..9 | 2130 | 99.1 | Minus |
| 3L | 28110227 | 3L | 17844334..17844715 | 936..561 | 1325 | 94 | Minus |
| 3L | 28110227 | 3L | 17844780..17844895 | 561..446 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:53 has no hits.
UFO03092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:47 Download gff for
UFO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 304..1261 | 4..952 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:57 Download gff for
UFO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 305..1262 | 4..952 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:35 Download gff for
UFO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED19-RA | 305..1262 | 4..952 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:35 Download gff for
UFO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17844316..17844714 | 562..952 | 94 | <- | Minus |
| 3L | 17844780..17844894 | 447..561 | 100 | <- | Minus |
| 3L | 17845754..17846197 | 4..446 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:57 Download gff for
UFO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17837416..17837814 | 562..952 | 94 | <- | Minus |
| arm_3L | 17837880..17837994 | 447..561 | 100 | <- | Minus |
| arm_3L | 17838854..17839297 | 4..446 | 98 | | Minus |
