UFO03094.5prime Sequence
733 bp (733 high quality bases) assembled on 2009-02-18
> UFO03094.5prime
CAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAACAGCCGCCG
TCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTGGCCACGAC
CAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTCCTCCTCGT
CGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGCAGGGCAGC
GGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGCGGTGGTGC
CACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGCCGCCTCGG
GAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGTGCTGTGCC
GTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAGATGGGCCA
TCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGGACGCTTGC
GCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTTCTAAGAGC
ACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAATTGCCCAG
CGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCTCGAACGCC
ATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAATACCATCGC
ATTGGCTGTCAGTGTTGGGGACCCTACCACGAGACCAACGAGCATGAGCG
CACTGCTTGCATCCCCAGAAGTCTGGCTAGATG
UFO03094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32486-RD | 2356 | CG32486-RD | 300..1022 | 8..729 | 3560 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3070162..3070540 | 386..8 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 3057641..3057764 | 684..561 | 590 | 98.4 | Minus |
| 3L | 28110227 | 3L | 3057829..3057944 | 560..445 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 3058066..3058127 | 445..384 | 310 | 100 | Minus |
| 3L | 28110227 | 3L | 3057537..3057582 | 729..685 | 180 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:30 has no hits.
UFO03094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:54 Download gff for
UFO03094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1026 | 1..733 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:42 Download gff for
UFO03094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1026 | 1..733 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:55 Download gff for
UFO03094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1026 | 1..733 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:55 Download gff for
UFO03094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3057829..3057943 | 446..560 | 100 | <- | Minus |
| 3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
| 3L | 3070162..3070544 | 1..386 | 98 | | Minus |
| 3L | 3057532..3057582 | 685..733 | 94 | <- | Minus |
| 3L | 3057641..3057764 | 561..684 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:42 Download gff for
UFO03094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3057829..3057943 | 446..560 | 100 | <- | Minus |
| arm_3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
| arm_3L | 3057532..3057582 | 685..733 | 94 | <- | Minus |
| arm_3L | 3057641..3057764 | 561..684 | 98 | <- | Minus |
| arm_3L | 3070162..3070544 | 1..386 | 98 | | Minus |
