UFO03096.5prime Sequence
1030 bp (942 high quality bases) assembled on 2009-02-18
> UFO03096.5prime
CAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTAAGACAAGA
AACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAAAAACGCAG
TTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCAACAAATGG
AGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAAACACTGAG
CTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCAAGTTATAT
GCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCATTGGCAGGT
TGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTAATGGAACT
CCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATCGAGAGACT
GTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGATGAGTTTG
AGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAGTAACCATG
CGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTAACCACTCC
CGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTACTGATCAAC
TACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAAAGGCAGTC
ACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCCGTGGATAG
CTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATCAGCATCAC
GATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAATTGAAGATT
GTGACTTTGATCCTGCCCATTTGTGTGGCTAATTGAGAAGTATCGAATAT
CGATGGTGTCGTAGTTCTCGCATTGCGATGCTGTCCATTGCCCGATTCTA
TGCGCGACTATCATCGTGAGTATTCTTTACGCGATCAACTGCTCCTGAGT
CAGACAATCGCAGCGTCTAGCACGATGTGTAAATTCAGTTATACACTACG
ACTGAACAGCCCTGAATGCCTAAACTTCAC
UFO03096.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1911 | CG5568-RA | 98..1154 | 9..1029 | 4375 | 96.2 | Plus |
| CG18586-RB | 1817 | CG18586-RB | 152..771 | 59..678 | 505 | 72.9 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 524..965 | 237..678 | 485 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5871820..5872333 | 175..688 | 2570 | 100 | Plus |
| 3L | 28110227 | 3L | 5871598..5871765 | 9..176 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5872385..5872557 | 689..859 | 750 | 98.3 | Plus |
| 3L | 28110227 | 3L | 5873918..5874359 | 237..678 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:26 has no hits.
UFO03096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:52 Download gff for
UFO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 97..949 | 9..859 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:03 Download gff for
UFO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..950 | 9..859 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:26 Download gff for
UFO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..950 | 9..859 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:26 Download gff for
UFO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5872385..5872557 | 689..859 | 98 | == | Plus |
| 3L | 5871598..5871765 | 9..176 | 100 | -> | Plus |
| 3L | 5871822..5872333 | 177..688 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:03 Download gff for
UFO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5865485..5865657 | 689..859 | 98 | == | Plus |
| arm_3L | 5864698..5864865 | 9..176 | 100 | -> | Plus |
| arm_3L | 5864922..5865433 | 177..688 | 100 | -> | Plus |
