UFO03101.5prime Sequence
583 bp (178 high quality bases) assembled on 2010-02-19
> UFO03101.5prime
CAGTCGACGTGGGCCTTAAAGGTTGTGAATTGCAATTGGACAACCCGTGG
AACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAGTTTACGTT
CGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCTGGGAGAAG
CCAACTCCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCGAGGGCAAG
ACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTACTTTAATAT
CCAGTACTATTTGCTGGGCGGCAAAAACAGCTCTGAGACGGAACTACCGC
CTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTAATCTACCC
TCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCGTCAAGGTGAC
GCTTGATCGTCCGTGGAAATTTGATCAGGACATGAAGATGGCGTTCACTG
TAATATCGCCCGTTGATCTTAATCTCAATCCTCTAGTCAAGGAGCCCTTC
TTGTTCGGGCTAGAAAAGTCATTCTGCTGTTTTTGTTGTCTCTCAGGACC
GCTGGCTGTCTTCACGAACATCCCGCAAACAGG
UFO03101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1105-RA | 1796 | CG1105-RA | 100..673 | 10..583 | 2615 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7065417..7065720 | 583..280 | 1310 | 95.4 | Minus |
| 3R | 32079331 | 3R | 7066141..7066299 | 280..122 | 750 | 98.1 | Minus |
| 3R | 32079331 | 3R | 7066921..7067037 | 126..10 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:12 has no hits.
UFO03101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:51 Download gff for
UFO03101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-RA | 93..669 | 7..583 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:10 Download gff for
UFO03101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-RA | 97..673 | 7..583 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:23 Download gff for
UFO03101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1105-RA | 97..673 | 7..583 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:23 Download gff for
UFO03101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7065417..7065720 | 280..583 | 95 | <- | Minus |
| 3R | 7066142..7066297 | 124..279 | 98 | <- | Minus |
| 3R | 7066924..7067040 | 7..123 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:10 Download gff for
UFO03101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2891139..2891442 | 280..583 | 95 | <- | Minus |
| arm_3R | 2891864..2892019 | 124..279 | 98 | <- | Minus |
| arm_3R | 2892646..2892762 | 7..123 | 99 | | Minus |
