UFO03105.5prime Sequence
1132 bp (1029 high quality bases) assembled on 2009-02-03
> UFO03105.5prime
CAGTCGACATGCCTTCACACACATGCACACCGACACGGGGACACTCACAC
AACGAAACCACACACACACACACACACACACAAACACTCACACACACACA
CACAAACACTCTCACACACACACATAAACACAAACACGTACAGATGATGA
ATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCACTGCCAGC
GAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACGATCCTGCA
AACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTACAGTAGAAG
AGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCGAGGTGGCC
GCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTTACGATCAA
GGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAAGGCCCAGA
CCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGGCCAATCGA
GATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATGGATGTGAA
ATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTACAAGCTGC
AGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCGAATCGCAG
TTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATCCGTAACGA
GGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGAGATTGAGT
CGCACGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAGTCAAGCTG
CCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAGCCAAGCAA
TGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCATACGCAGATC
GGATCGGCGGAGCCCATGCCATCGAGTTGGTGGGCAGCGAGCGACGCATG
CGATGAGCCATGTGTACAGCAGTACGGCGATGCAGCATATGATATTGTAC
TCGATCGCTGCCCAGATTGCCGCTGAGGTGCTGCACCACTGACAAACGAT
GAAATTGTCTATGCCGCCACGATATATACACGATGTGAACTCGCTGGTGC
CAGCTACCGCCCATCGATCAGCTTGACCGAAT
UFO03105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo2-RM | 2602 | CG32593-RM | 611..1754 | 9..1120 | 4835 | 96.4 | Plus |
| Flo2-RJ | 3212 | CG32593-RJ | 421..1431 | 142..1120 | 4170 | 96 | Plus |
| Flo2-RI | 2240 | CG32593-RI | 382..1392 | 142..1120 | 4170 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14930746..14931306 | 282..842 | 2790 | 99.8 | Plus |
| X | 23542271 | X | 14926601..14926875 | 9..283 | 1375 | 100 | Plus |
| X | 23542271 | X | 14931802..14931890 | 850..936 | 345 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:09:38 has no hits.
UFO03105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:11 Download gff for
UFO03105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-2-RC | 611..1677 | 9..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:09 Download gff for
UFO03105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-2-RC | 611..1677 | 9..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:37 Download gff for
UFO03105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo2-RM | 611..1677 | 9..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:37 Download gff for
UFO03105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14926601..14926874 | 9..282 | 100 | -> | Plus |
| X | 14930747..14931314 | 283..849 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:09 Download gff for
UFO03105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14820634..14820907 | 9..282 | 100 | -> | Plus |
| arm_X | 14824780..14825347 | 283..849 | 99 | -> | Plus |
