UFO03106.5prime Sequence
1154 bp (1024 high quality bases) assembled on 2009-02-03
> UFO03106.5prime
CAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCGGTAATCCC
ACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAGGTCTTCAT
CCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATACACGGCTGC
CCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGGCCACCATC
AATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCCTGCGGCAC
CTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGATCTATATGT
GCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCAAATTTGTG
GCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAGCTGATCGA
TCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATTCGATCGTC
CGGGGCGAACGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGCCAGGTTTTCACCGTACACGCCACATCTGCGATATATGTGTA
GAACTGCCGAAATCGTCGTGTATTCCCTCAGAGCGATGAAACGTTTCAGT
TGCTCATGGAAACGGTGTACAGGGTGAACACCTATCCATATCCACAGCTC
ACGTCTTTCATGCATACGAATTCCGATGAACATCATCTAGGCGGGCAAGA
ATTG
UFO03106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5447-RB | 1392 | CG5447-RB | 130..584 | 7..461 | 2275 | 100 | Plus |
| CG5447-RA | 1392 | CG5447-RA | 130..584 | 7..461 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26452859..26453022 | 7..170 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 26453088..26453241 | 170..323 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 26453567..26453706 | 322..461 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:05 has no hits.
UFO03106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:10 Download gff for
UFO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-RA | 126..591 | 1..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:51 Download gff for
UFO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-RA | 125..590 | 1..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:39 Download gff for
UFO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5447-RA | 125..590 | 1..469 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:39 Download gff for
UFO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26452854..26453022 | 1..170 | 98 | -> | Plus |
| 3R | 26453089..26453241 | 171..323 | 100 | -> | Plus |
| 3R | 26453569..26453706 | 324..461 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:51 Download gff for
UFO03106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22278576..22278744 | 1..170 | 98 | -> | Plus |
| arm_3R | 22278811..22278963 | 171..323 | 100 | -> | Plus |
| arm_3R | 22279291..22279428 | 324..461 | 100 | == | Plus |
