UFO03107.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2009-02-03
> UFO03107.5prime
CAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAACGCAACCAG
CTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGCAGCACCGG
AAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCATGTCCACA
CGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACATATTGGCG
CTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATGGACGAACT
GGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACCGGCCCTAC
CCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTGACCACTCC
CTCAACTATCAGAACTTCGATATGGGCGGACTGGTGTGCACCTGCATGAT
AGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAAACCCTCCC
ACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTATTACAACT
CTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCACAGCATCAT
TGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGAACTACCAC
CTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCATTGTGTTT
CTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTACAAGTACTTGAC
GCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGAGCCACCGA
CTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAAGAGCGGTCTTAC
TCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCAGTACTTGAAGCA
GGCACCACCGCCATCTTATCAGTGGCCATGTCAAACTACGAAGAGGGTGA
AGACGCAGCTGTTGGAGGTGCGGAGGTTAATCCTTCGGTGGCCCCTCTTC
TTCGTGGCCCTTGAGCAGCCACTACGCGAACGTAGCCTCCATCACGGATG
ACACATGGATAATAACAATGATCAGCGAACAATAACAACACTATTGCATG
TTCAATGCCAATACGCCACCATGCCCCGCCAGCGATGCAGCTGTAAACGC
TTATGTCCACGAGAACGGACAAATTGGAGGTTTTGACCTG
UFO03107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RA | 2120 | CG14767-RA | 157..1290 | 9..1137 | 5275 | 98.3 | Plus |
| CG14767-RB | 2043 | CG14767-RB | 68..1213 | 9..1137 | 5145 | 97.3 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..1302 | 9..1137 | 5145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8718874..8719489 | 1113..500 | 2560 | 97.3 | Minus |
| 2R | 25286936 | 2R | 8719855..8720033 | 360..182 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 182..9 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8719646..8719784 | 499..361 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 36..110 | 127 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..196 | 35..94 | 122 | 68.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9226 | 35..94 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6839 | 39..128 | 110 | 59.3 | Plus |
UFO03107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:09 Download gff for
UFO03107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 149..1270 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:18 Download gff for
UFO03107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 151..1272 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:13 Download gff for
UFO03107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RA | 151..1272 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:13 Download gff for
UFO03107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719646..8719784 | 361..499 | 100 | <- | Minus |
| 2R | 8719855..8720032 | 183..360 | 100 | <- | Minus |
| 2R | 8723257..8723436 | 1..182 | 97 | | Minus |
| 2R | 8718865..8719489 | 500..1120 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:18 Download gff for
UFO03107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4607151..4607289 | 361..499 | 100 | <- | Minus |
| arm_2R | 4607360..4607537 | 183..360 | 100 | <- | Minus |
| arm_2R | 4610762..4610941 | 1..182 | 97 | | Minus |
| arm_2R | 4606370..4606994 | 500..1120 | 97 | <- | Minus |
