UFO03108.5prime Sequence
1161 bp (1021 high quality bases) assembled on 2009-02-03
> UFO03108.5prime
CAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGGCAGAGGTG
GCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCGAAGATCGA
GGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGCGCGGACCG
ACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGGACGTAGAG
GAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCAAAGGAAAG
AGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGAACTGGCTC
GTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTGGTGGCCCC
CGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAGCACAGTGT
CAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGAGATCAACA
CGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCGACTTCACC
AAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATGTTCAAGCG
GATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGTGGCCACGC
ACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGACTGGTTCGG
AATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACCGTCGCGTC
TCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAATGGGCGGCG
ATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCCAGCTGCTA
AGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTGGATGAGAA
ATTGCGGGAAGCCAGTGAGAAGGATCAGGAAGGGGTGCTCCGTTAGTAAC
CGACGTTCCGAACGACGGAACCTTCCGAATGATTAACTTCGATGCAAGCT
TTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGGCCTAGAGAATCCTGGTCAT
GACTAGTGCTGCATCCCACCAAATAAAAAACGGCCCGGCGCACGGAGCGT
TCTGAACCAATCCGATATGGAGTCTGAAGTCATTACTGGATTCCTATTCC
ACACAGGAGTC
UFO03108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1902-RC | 1782 | CG1902-RC | 161..1097 | 8..943 | 4660 | 99.9 | Plus |
| CG1902-RA | 1749 | CG1902-RA | 128..1064 | 8..943 | 4660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9604244..9604611 | 307..674 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 9603881..9604180 | 8..307 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 9604669..9604939 | 674..943 | 1305 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:48 has no hits.
UFO03108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:08 Download gff for
UFO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RC | 152..1095 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:45 Download gff for
UFO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..1064 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:28 Download gff for
UFO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1902-RA | 121..1064 | 1..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:28 Download gff for
UFO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9603874..9604180 | 1..307 | 99 | -> | Plus |
| 2R | 9604245..9604611 | 308..674 | 100 | -> | Plus |
| 2R | 9604670..9604939 | 675..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:45 Download gff for
UFO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5491379..5491685 | 1..307 | 99 | -> | Plus |
| arm_2R | 5491750..5492116 | 308..674 | 100 | -> | Plus |
| arm_2R | 5492175..5492444 | 675..943 | 99 | | Plus |
