UFO03110.5prime Sequence
1127 bp (1010 high quality bases) assembled on 2009-02-03
> UFO03110.5prime
CAGTCGACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCCAAACGCCC
GCCCAACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAATGGGCTCTA
TCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCCGCAAACGC
TGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATCAGACGAAC
AGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTTGACAAGCA
CGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAAGGAACTGA
TCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCGACCAGATC
CTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGGACTTCGAGGAATT
CTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACATGCTGACCC
GCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGGGCGATGAG
CCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCGCCGCTCAC
CATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGTGGACGTCA
TACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCGAGAGCACA
AGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAGCGCTATGA
GGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCATCATGCATC
TGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCCTGGAGCTG
GTGCATCACTGGTGGCGCGTGGGTCTGGTCTACCTGGGCTGGCGTGTTAG
CCGGTTCCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCTAGCGGCG
CATCGGGTGGAGTAATACGCAACTGATCACAGCCCACATTGCCACGATTA
ATATGAACCTACTCGGGAAATGGAGTACGCCATTGTCCAGCTGCTGGCCT
TTCTGGGTCTTTCTGCTTCACGACTTGGGTACCTCGTGTACGCCACTTTG
AACGAACCAGCACGATCCAGAATTGCTATGTGGCGCCATTTGTCCGGTGC
CGATCCAATTTGCTGGGTGAGGAATCG
UFO03110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-4-RB | 2345 | CG1697-RB | 250..1336 | 9..1102 | 5040 | 98.2 | Plus |
| rho-4-RA | 2057 | CG1697-RA | 250..1336 | 9..1102 | 5040 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11604310..11604674 | 247..611 | 1825 | 100 | Plus |
| X | 23542271 | X | 11604736..11605078 | 611..955 | 1500 | 98.3 | Plus |
| X | 23542271 | X | 11600087..11600326 | 9..248 | 1200 | 100 | Plus |
| X | 23542271 | X | 11589621..11589726 | 9..114 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11591714..11591819 | 9..114 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11595900..11596005 | 9..114 | 455 | 95.3 | Plus |
| X | 23542271 | X | 11587528..11587633 | 9..114 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11593807..11593912 | 9..114 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11597993..11598098 | 9..114 | 440 | 94.3 | Plus |
| X | 23542271 | X | 11605146..11605279 | 966..1102 | 230 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:43 has no hits.
UFO03110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:13 Download gff for
UFO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 247..1335 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:32 Download gff for
UFO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1338 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:44 Download gff for
UFO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-4-RA | 250..1338 | 9..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:44 Download gff for
UFO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11600087..11600326 | 9..248 | 100 | -> | Plus |
| X | 11604312..11604673 | 249..610 | 100 | -> | Plus |
| X | 11604736..11605078 | 611..955 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:32 Download gff for
UFO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11494120..11494359 | 9..248 | 100 | -> | Plus |
| arm_X | 11498345..11498706 | 249..610 | 100 | -> | Plus |
| arm_X | 11498769..11499111 | 611..955 | 98 | -> | Plus |
