UFO03111.5prime Sequence
1083 bp (1003 high quality bases) assembled on 2009-02-03
> UFO03111.5prime
CAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGGTGAAGCAC
GATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGCGACATTGA
GCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCATCAAGAGCA
TCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGCTGACTGGA
ATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGGGATTTGGC
CGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGTTGCCCGAT
GCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATATCATCAAT
GTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCGGTGGCCCC
TACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAACAAGTACC
AGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTACCATGATG
CAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGCGGCTGCAA
GGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACTGCTGCACC
CGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTGTGCTACTG
TTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCCGTTGCCAA
CCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCTGGTGCAAA
AGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCGAAATGGCG
CGTTCCAAAAAGGCTTGTCTCATCTTCTTCGACGAAATTGATGCTATCGG
TGGTGCCCGATTCGACGATGGGGCCGGCGGCGACAACGAGGTGCAGCGCA
CCATGTTGGAGCTTGATTAACCAACTGGATGGCTTCGATCCGCGCGGAAT
TATCAGGTGCTGATGGCCACATCGACCCGACACGTTGGATCGGCGCTCAT
GCGTCCCGATCGTCTGGACGAAAGTGGAGTCGCTGCTGACAGACGGTCGC
CTCCGCACATCCTTTAGATTCCACGCCCGGCTC
UFO03111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt1-RA | 1515 | CG1341-RA | 118..1196 | 9..1079 | 4960 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7652824..7653837 | 1019..9 | 4815 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:50 has no hits.
UFO03111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:12 Download gff for
UFO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt1-RA | 112..1143 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:16 Download gff for
UFO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt1-RA | 118..1149 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:44 Download gff for
UFO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt1-RA | 118..1149 | 9..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:44 Download gff for
UFO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652777..7653837 | 9..1058 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:16 Download gff for
UFO03111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3540282..3541342 | 9..1058 | 98 | | Minus |
