UFO03114.5prime Sequence
1134 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03114.5prime
CAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCGGATGCTTT
GGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACGATCAAAGT
TTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCAACAGATCT
ACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGTTCTTCCCG
TTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATCTATGGAAA
CCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCAGCGGGAGC
AGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGGGATTCGTG
CAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGCCTGCAGAC
AGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGACCGCCTTTG
GCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGCTCTATCGC
GGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGAATCTATAT
GCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGACTTTGTGC
GCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGCTGGTGACC
ACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGTGTCATTCC
GTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCACAAGTACC
GGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACGGCTGGAGG
AGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTTCCCTTCAA
TGCCGCCACTTTCCTGGGCTACGAGTATGCGCTGGAGTGGTGTCAGCGGT
GGAACGGCACCTACGTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATATCATAATCATAATCACAAC
TAGCTAGAGATCCTGGTCATGACTGTGCTGATCTCACCAATAAAAAACGC
CGGCGCAACGACGTTCTGAACAAATTCGAATGGAGTTCTGAGGTCATACT
GGATCTTATCAACGGAGTTCAAGCGAACCGATCC
UFO03114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5646-RA | 1273 | CG5646-RA | 99..1008 | 8..917 | 4475 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27559644..27560038 | 917..523 | 1960 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27560274..27560515 | 408..167 | 1195 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27560761..27560876 | 169..54 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27560100..27560214 | 523..409 | 560 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27561172..27561221 | 57..8 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:50 has no hits.
UFO03114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:10 Download gff for
UFO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 76..989 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:57 Download gff for
UFO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..1008 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:07 Download gff for
UFO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5646-RA | 95..1008 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:07 Download gff for
UFO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27559644..27560037 | 524..917 | 99 | <- | Minus |
| 3R | 27560100..27560214 | 409..523 | 99 | <- | Minus |
| 3R | 27560274..27560514 | 168..408 | 99 | <- | Minus |
| 3R | 27560763..27560875 | 55..167 | 99 | <- | Minus |
| 3R | 27561175..27561225 | 1..54 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:57 Download gff for
UFO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23385822..23385936 | 409..523 | 99 | <- | Minus |
| arm_3R | 23385996..23386236 | 168..408 | 99 | <- | Minus |
| arm_3R | 23386485..23386597 | 55..167 | 99 | <- | Minus |
| arm_3R | 23386897..23386947 | 1..54 | 92 | | Minus |
| arm_3R | 23385366..23385759 | 524..917 | 99 | <- | Minus |
