UFO03121.5prime Sequence
1121 bp (1002 high quality bases) assembled on 2009-02-03
> UFO03121.5prime
CAGTCGACATGAAGTCGGTTCAGTGGGTGAAAATATTGCTTTGCCTGATC
CTTGCGTGCGTCAATGTATTCCTCTTCGTGGTGTCTTGGGGAGTGGACTA
TCGCATCTTGGTAGCTAGGGAGCATATACGCTTCCGCCAGGAGATGCCCA
CCATGGACAGTTGGATAAACTCGCCATTCGGGAAGCTGAAAAACTATGTG
TTCAACGTGACCAACGCCGAGGAGTTTCGCAGCGGTCGTGATAGCAGACT
TAAGGTAAAGGAGATCGGCCCCATTGTGTACAGAATCGTGGGGTTCAACG
ACATCTTAGATCGCAACGAGACCAACGTTAGGTATCGCAAGCACAGATAC
CGCGTAGTGGAATTCCTCCCGGAGGAAAGCGTAGCACCCGACGTCCTTAA
CTGGACCATTACCTCCACAAACAACGTTATCCTGGGCGCAGCGACGAAAG
TCAAGCATACGGCGCCACTTGCAGCCTTCGGTTTTGATGCAGCGCTCATG
ATGGAGGATATATTTGTTACAGACAGCGTATACTACTTCCTGTGGGAGTT
CACCCGTCCCCTGCTGCAAACGCTCTCCAGGATCTCGAACATAAGACCCA
ACGTCGCTGTTCTCTACAACGCTCTCAAAGAGAAGGAAGAGGTTTACACA
GTCAACATCGGCCCTAAGCGCGGCATTGAAAACTTTTTCCGCATCGAGAC
GCTTAACGGCGAGGTGATCATCCGGGAACAACTTCCGCACACCCGTCAGT
ACGACTCCAACTCTTGCCCCTTTAACGTTTCCGGAGCGCTGGACAACTCT
CTCTTTCCTCCCTTTGTCCAGCCGGATACGCCGCTGAGCATAGTGGCTAT
CGAGTCCTGCCGGGTCCTTCCGCTGACCTACCAGCGTCAGGAGCGTTACA
CGGCCTTGATACCTTCGCTACACTCTGCTTCAGTCACATCAAAGCCTCCC
GCTGCTGACACAGCTACGTGTCAGCTACCCGACGATGTTTGACGTATCCA
GTGTTGTGATAAATGACGCTCCCCTCTGGCGTTTCGATGCCACACTTTAC
GAGCAGCCTACCACTGGAGCCAGCACTTACGAAGATACCACCCCACGGCG
AGGATCCGAGCCTACTTTGCT
UFO03121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1726 | CG2736-RA | 84..1201 | 9..1112 | 4990 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24974646..24975258 | 621..9 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 24974260..24974584 | 943..621 | 1525 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:44 has no hits.
UFO03121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:08 Download gff for
UFO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 106..1238 | 2..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:32 Download gff for
UFO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..1208 | 2..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:41 Download gff for
UFO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..1208 | 2..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:41 Download gff for
UFO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24974182..24974584 | 621..1012 | 96 | <- | Minus |
| 2R | 24974647..24975266 | 2..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:32 Download gff for
UFO03121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20861705..20862107 | 621..1012 | 96 | <- | Minus |
| arm_2R | 20862170..20862789 | 2..620 | 99 | | Minus |
