UFO03124.5prime Sequence
1060 bp (1026 high quality bases) assembled on 2009-02-03
> UFO03124.5prime
CAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCTATGTGAAC
GATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGATATCCGGC
GGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCGTGAGGCAC
CTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCCTCATGCTG
TCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCGACTTCGAA
ATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGCCATTTTCG
ATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACGCCACAGTT
GGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCTTTGAACGG
AGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCATAGCATTCG
ATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGAGCTACGGA
CAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACTCCGTTCTC
CGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGAGGGCTTCC
TGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAAACCGACTG
TTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATGACCATGAT
CCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCACGAGAAGA
TGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGTCGGCCAAC
GCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAGGCGGCCCT
CATAATATACATGCTCTTCATTCTGGGCCTGACACCCTACTCCGTGGTGG
CACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCTTCGTCTCA
TGCTTCGTGCCTGGACTGCAGTCGGTGTCTGTCTGATCCCTGGGTCTATG
CCACCAGTCATCCCAAGTATCGTCTGGGAGCTGGAGCGCCGTCTGGCGGT
GGCTGGGCAT
UFO03124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh5-RB | 1572 | CG5279-RB | 297..1351 | 9..1060 | 5035 | 99 | Plus |
| Rh5-RA | 1347 | CG5279-RA | 72..1126 | 9..1060 | 5035 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12009139..12009611 | 591..1060 | 1950 | 97.5 | Plus |
| 2L | 23513712 | 2L | 12008743..12009089 | 245..591 | 1735 | 100 | Plus |
| 2L | 23513712 | 2L | 12008449..12008684 | 9..244 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:26 has no hits.
UFO03124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:11 Download gff for
UFO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 70..1128 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:31 Download gff for
UFO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 68..1126 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:20 Download gff for
UFO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh5-RA | 68..1126 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:20 Download gff for
UFO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12008445..12008684 | 1..244 | 98 | -> | Plus |
| 2L | 12008743..12009089 | 245..591 | 100 | -> | Plus |
| 2L | 12009140..12009611 | 592..1060 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:31 Download gff for
UFO03124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12008445..12008684 | 1..244 | 98 | -> | Plus |
| arm_2L | 12008743..12009089 | 245..591 | 100 | -> | Plus |
| arm_2L | 12009140..12009611 | 592..1060 | 97 | | Plus |
