UFO03126.5prime Sequence
1055 bp (886 high quality bases) assembled on 2009-02-03
> UFO03126.5prime
CAGTCGACATGAGTCTACAGGACGAGAGTTTTCCGACGGACGAGCTGTTT
GACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACCTGGTTCGC
GGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCCATTTTTGG
AGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATGTGGCCAAC
AAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGATCAGGAGGA
TGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAAACTGGGTT
GCGAGAAGGCTCCATTGGGCAGCGGGCGCTCCAGCAAGGCGGTCTCTTAC
CAGGACATCCATTCGGCCTACACGAAGCGCCGCTTCCAGCACGTGACCAG
CAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCAAAAGAGAC
GCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGCCGGAGAGT
CTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGACTTCAAGGT
GGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTACAATTCCA
ATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCGAGAACGAG
AGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAGCGTCTGCA
GGGCTTCACGAGTATGTCCAGGAACGACTGGACAGAAAGACAGATGATTT
TGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGCTAAGCGAAT
GCCAGCAGAAGCTTAGGCGCCAGCAGGACAACTCACAGCACCACTTCATG
TACCACATTCGATCGCGACCAGTGCAAGGCCACTCAAACGGATTTCCTGG
TGGACACATACCCGCCTCGGAAACGTCCTGTCACACCCCATCCCTGGGCG
ACCTGACCTACACAGCAGCAAAGATCATCGAGTGCACTGCTCATGTGGCG
CTTCTGCCGATTGACCAGATCCCGTCAGTCACGCGCGATCATCCAATCTT
GACTT
UFO03126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swa-RA | 2022 | CG3429-RA | 113..1171 | 9..1045 | 4735 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6364443..6365145 | 973..279 | 3115 | 98.9 | Minus |
| X | 23542271 | X | 6365325..6365596 | 280..9 | 1360 | 100 | Minus |
| X | 23542271 | X | 6362210..6362662 | 944..489 | 1300 | 88 | Minus |
| X | 23542271 | X | 6362667..6362833 | 448..282 | 625 | 91.6 | Minus |
| X | 23542271 | X | 6363110..6363242 | 280..142 | 525 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:23 has no hits.
UFO03126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:03 Download gff for
UFO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..1136 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:29 Download gff for
UFO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1135 | 1..1016 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:18 Download gff for
UFO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 108..1135 | 1..1016 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:18 Download gff for
UFO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6364449..6365144 | 280..968 | 98 | <- | Minus |
| X | 6365326..6365600 | 1..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:29 Download gff for
UFO03126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6258482..6259177 | 280..968 | 98 | <- | Minus |
| arm_X | 6259359..6259633 | 1..279 | 98 | | Minus |
