UFO03127.5prime Sequence
1099 bp (993 high quality bases) assembled on 2009-02-03
> UFO03127.5prime
CAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCACGGAGAAG
GATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTACTTTGTGAC
CTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCGCACCAACA
TGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCAAGTCTGGA
GAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATTCCTATTGA
TGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCAGGGCTACA
TCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTCCCTTTGGC
ATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTACGGCATGTT
GATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCGCGGTGGAG
GTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAGGTGAGGGT
CCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATTCCGCCCAA
CGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACAGTTTGGAA
CCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACGGATTCGAT
GGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGTACCGTCTG
GTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTCGCATCCCA
CTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCTGGGGAACT
GATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATCAAGTCGCT
GCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACACTACGGCTATGA
GACTCTGATGACCGAGCTGCCCACCTACATGAGCAGGTGCTCGCTCTCCT
GAGTCGAACGGTCTGCTCAGCTCCTGCCTACTGGCATGTGGCCTCTCTCC
ATGTCATCTCGTGGTCGCCGATGATGATAGCTCGAAGAGATTCTCCGCAC
ACGCCACAGAGCTGATCAAGAATTGCAGTTGGACGGGGATGGCTATCCC
UFO03127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RD | 2870 | CG8098-RD | 886..1964 | 9..1069 | 4875 | 98 | Plus |
| Picot-RC | 2367 | CG8098-RC | 383..1461 | 9..1069 | 4875 | 98 | Plus |
| Picot-RA | 2735 | CG8098-RA | 751..1829 | 9..1069 | 4875 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656631..16657194 | 812..249 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 16657263..16657440 | 249..72 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 16656399..16656568 | 974..811 | 580 | 93.5 | Minus |
| X | 23542271 | X | 4784486..4784872 | 288..674 | 465 | 74.7 | Plus |
| 2R | 25286936 | 2R | 16663514..16663578 | 73..9 | 325 | 100 | Minus |
| X | 23542271 | X | 4784336..4784422 | 105..191 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:08 has no hits.
UFO03127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:03 Download gff for
UFO03127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 748..1832 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:00 Download gff for
UFO03127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 745..1829 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:49 Download gff for
UFO03127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RA | 745..1829 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:49 Download gff for
UFO03127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16656313..16656566 | 813..1052 | 92 | <- | Minus |
| 2R | 16656631..16657194 | 249..812 | 100 | <- | Minus |
| 2R | 16657264..16657439 | 73..248 | 100 | <- | Minus |
| 2R | 16663515..16663584 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:00 Download gff for
UFO03127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12543818..12544071 | 813..1052 | 92 | <- | Minus |
| arm_2R | 12544136..12544699 | 249..812 | 100 | <- | Minus |
| arm_2R | 12544769..12544944 | 73..248 | 100 | <- | Minus |
| arm_2R | 12551020..12551089 | 1..72 | 94 | | Minus |
