UFO03129.5prime Sequence
1144 bp (1050 high quality bases) assembled on 2009-02-03
> UFO03129.5prime
CAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCGGCGGGGGA
GGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAGATTATAGC
CACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCAGCGCATGG
TCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGAAGCAGCTC
CACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACAAACAATCA
AATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGATCCAGCGGG
ATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCCAGTCTGTT
CAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAGGCGCGCGG
AGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTACCGGCAGCT
CCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCGAGGACAAC
TTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAGATGGAGGA
GCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCATACGGGAGT
TGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGCTTGGCGCC
CTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCGCAGGTGGA
ACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCGCAAGGCGA
GCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGGTGGGCATC
CTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTTCAGTTCAA
GAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATATCATAATCATAATCACAACTAGCCTAGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAAACGCCCGGCGGCA
CCGAGCGTTCTGAACAAATCCAGATGGGAGTTCTGGAGGTCATTACTGGA
TCTTATCAACAGGAGTCAGCGGGCCTCGATATCCAATTACGCCCCGCCCT
GCCATTATCGCGAGTATTGGTGTGTGTAATTCATTAAGCCATTC
UFO03129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 284..1130 | 8..854 | 4235 | 100 | Plus |
| Syx7-RA | 1573 | CG5081-RA | 247..1093 | 8..854 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 343..761 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 21446863..21447007 | 200..344 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 21446254..21446375 | 8..129 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 21447555..21447648 | 761..854 | 470 | 100 | Plus |
| 3L | 28110227 | 3L | 21446442..21446512 | 129..199 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:06 has no hits.
UFO03129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:01 Download gff for
UFO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RB | 296..1152 | 8..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:27 Download gff for
UFO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 8..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:24 Download gff for
UFO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 8..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:24 Download gff for
UFO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21446254..21446375 | 8..129 | 100 | -> | Plus |
| 3L | 21446443..21446512 | 130..199 | 100 | -> | Plus |
| 3L | 21446863..21447007 | 200..344 | 100 | -> | Plus |
| 3L | 21447081..21447497 | 345..761 | 100 | -> | Plus |
| 3L | 21447556..21447658 | 762..864 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:27 Download gff for
UFO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439354..21439475 | 8..129 | 100 | -> | Plus |
| arm_3L | 21439543..21439612 | 130..199 | 100 | -> | Plus |
| arm_3L | 21439963..21440107 | 200..344 | 100 | -> | Plus |
| arm_3L | 21440181..21440597 | 345..761 | 100 | -> | Plus |
| arm_3L | 21440656..21440758 | 762..864 | 96 | == | Plus |
