UFO03130.5prime Sequence
1167 bp (1029 high quality bases) assembled on 2009-02-03
> UFO03130.5prime
CAGTCGACATGGCCATTAAACCGGGACTCGGTCGCAAGACCAGCAACAAG
AACCCGCCTATCCTGAGCCACGAGTTTGTGATCCAGAACCACGCGGACAT
CATCTCCTGCGTAGCCATGGTCTTCGTGGTCGGCCTGATGAACGAGTCGA
CGGCGGCGTTCGCCAGCGCGTTCATATCCCTGCACCACAACGTCAGCGGT
GAGGACCCCAGCCGGGAGCAGCCATATGGCAAGCCATACACCTACATCGC
CGGCATCAAGGATTACTGCGCGATATTCTTCTACACGCTGACCTGCATAA
TCATGCACGCGATCATCCAGGAGTTCGTGCTGGACAAGATCAGCAAAAAA
CTACACCTGTCCAAGTTCAAGCTGGCCCGCTTCAACGAGTCCGGCCAACT
GGTGGCCTTCTACCTGCTCTCCTTCGTCTGGGGCGCCCACGTGCTGCTGA
AGGAGGGCTACCTCGGACAGGTGGCCCAGCTGTGGGAGGGCTTCCCCGAC
CATCCCATGAGCTTTCTGCACAAGTTCTACTTTGTGGTGCAGCTGGCCTA
CTACCTACACATGCTGCCGGAGCTCTACTTCCAGAAGATCAAGACCAAGG
AGGAGCAGCAGCCCAAGATCGTGCACTCGATCAGCGGCTTCACCCTGATC
GTCCTGGCCTACACGCTTAGCTTCCAGCGCCTGGCCCTCGTGCTGCTCAC
GCTGCACTACTTCAGCGAGCTGCTGTCGCACGTCTTCCAGCTGATCGGCG
TGTTCGACCGCGAGGAGCGACTGGCCAAGCTGCGGGTGGTGAACAATGCC
GTCTTTTTCCTGATCCGCTTCGCTACGTCCGTGATCGGTGTGCTCACGCT
GTACTACGGCATCGGGGGTGTGCGATCCCTGCTGGCCTTGGGCGGTCTGA
TCGCTCTGCAGGGCTACCTGGTCTTCTCTTCATCACGGAGCAGCTGCGCG
CCAAGCGCGAGGCCAGAGGAGGCCAGCGGGAGGCCAAGCTGGCGCTGCAG
ACCAAAAGCCAGCCAAGACGCCCAAGGACAGGTGAGCGCAGAGAAAGCGA
CCTGCCTGGAGGCGGAACAGACTCGCCCAGTTCCATCAGCAGAGCTCAGG
CAAGCTTTCTAGACATTCGTTTGGGCGCCGGCCAGGTAATGGGCCTTAAT
CTTATCCTAAATCTAAA
UFO03130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TRAM-RE | 1656 | CG11642-RE | 183..1284 | 9..1098 | 5100 | 98.3 | Plus |
| TRAM-RD | 1623 | CG11642-RD | 150..1251 | 9..1098 | 5100 | 98.3 | Plus |
| TRAM-RC | 1896 | CG11642-RC | 423..1524 | 9..1098 | 5100 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 936349..937375 | 9..1030 | 4875 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:46:17 has no hits.
UFO03130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:39 Download gff for
UFO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1530 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:03 Download gff for
UFO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1530 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:32 Download gff for
UFO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TRAM-RC | 416..1530 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:32 Download gff for
UFO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 936342..937456 | 1..1104 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:03 Download gff for
UFO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 830375..831489 | 1..1104 | 97 | | Plus |
