UFO03131.5prime Sequence
1165 bp (1038 high quality bases) assembled on 2009-02-03
> UFO03131.5prime
CAGTCGACATGACACTTCCTAGTGCGGCTCGCGTGTACACAGATGTCAAT
GCGCACAAACCGGATGAATATTGGGACTATGAAAATTATGTGGTTGATTG
GGGCAATCAAGACGATTATCAGTTGGTCCGTAAATTAGGCCGTGGAAAGT
ATTCTGAGGTCTTCGAGGCCATTAATATTACGACCACGGAAAAGTGCGTT
GTTAAAATTCTGAAACCTGTTAAAAAAAAGAAGATAAAGCGTGAAATCAA
AATTTTGGAGAACTTGCGTGGAGGAACTAATATAATAACACTTTTAGCCG
TTGTCAAGGACCCAGTTTCTCGAACACCAGCGTTGATTTTTGAGCACGTC
AACAACACAGATTTCAAGCAACTTTACCAAACATTAACTGATTATGAGAT
TCGTTACTACTTGTTTGAGCTTCTTAAGGCACTTGACTACTGCCACAGCA
TGGGAATAATGCATCGTGATGTAAAGCCCCACAATGTTATGATAGATCAC
GAAAATCGAAAATTGCGCCTTATAGATTGGGGACTTGCCGAATTTTACCA
TCCTGGTCAAGAATATAATGTTCGTGTGGCTTCGAGATACTTTAAAGGTC
CCGAATTACTGGTAGATTACCAGATGTATGATTACTCACTGGATATGTGG
TCACTAGGTTGTATGTTGGCGTCGATGATATTCCGAAAAGAGCCATTTTT
CCACGGACATGATAACTATGATCAATTGGTACGCATTGCCAAGGTGCTGG
GCACCGAAGAAACTCTACGCATATTTGGATAAATACAATATTGACCTCGA
TCCAAGATTTCACGACATTCTACAGCGTCACTCACGAAAGCGATGGGAAA
GATTTGTCCATTCTGACAACCAACATCTAGTTTCTCCTGAAGCACTAGAC
TTTCTTGATAAACTTTTACGCTATGATCACGTTGATCGACTCACAGCTCG
CGAGCATGACCCATCCATATTTCTTACCTATTGTCAATGTCAAATGATCC
CAATAATCAGCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAGTGTCATAATCATATCATAATCATATCATAATCACACCTAGCCTAG
GAATCTGTCATGACTTGCTGGATTCTACCATAAAAGCGGTTCGCTCACCG
GAGGCTTCTGGACAA
UFO03131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-RA | 1536 | CG17520-RA | 328..1334 | 9..1012 | 4900 | 99.4 | Plus |
| CkIIalpha-RC | 1423 | CG17520-RC | 215..1221 | 9..1012 | 4900 | 99.4 | Plus |
| CkIIalpha-RB | 1561 | CG17520-RB | 353..1359 | 9..1012 | 4900 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23102252..23103258 | 9..1012 | 4780 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 23:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2061..2124 | 247..309 | 128 | 72.7 | Plus |
UFO03131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:38 Download gff for
UFO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RC | 269..1286 | 2..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:08 Download gff for
UFO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RB | 347..1364 | 2..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:04 Download gff for
UFO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-RB | 347..1364 | 2..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:04 Download gff for
UFO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23102246..23103263 | 2..1017 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:08 Download gff for
UFO03131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23095346..23096363 | 2..1017 | 98 | | Plus |
