UFO03133.5prime Sequence
1127 bp (1035 high quality bases) assembled on 2009-02-03
> UFO03133.5prime
CAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAAAATTCGAA
TCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTACCGGCTACT
ACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGAAATCGTGC
GCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGGGCTGCAAG
CGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCACAAGTGCCA
TGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGATCGCGGAAA
TCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGAGCTGGAAC
TCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTGCTGCTCGA
GCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAAGCGGGTCC
AGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTTTCACGTTC
ACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTATCGGCGAGA
ATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGAATACTTCG
AGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTGACAATATG
CCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAACACAATTC
ATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTACTTAAGGT
CCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGAACGAATAT
GCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTGAAGGATAA
CATAATCAGGAAATCGAAGAGTCGTCCACAGTTCATTCCCAGGAAAACTA
TGAAGACGAGCTCGATCAACAGAATTCCAAGACCGAGGACATGAAAATTG
CTAGCGTCAAGAGCTGCCAGAATTATGGGAAATAGAGAGGAAAGCTGGTC
ATAGAGAGGAAAAATGCAAACTGATGAAATTTTTCGTGGCGAGAAGATGT
CGTCGTTTTATAGACTCCATGGATCTTTCTATCTAATTCCCAAAGGCGGC
GCCAATGCACTAGCCTTTCTAGAACAT
UFO03133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp-RA | 1412 | CG17153-RA | 55..1162 | 5..1109 | 5190 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12118971..12119539 | 544..1109 | 2200 | 96.3 | Plus |
| 3L | 28110227 | 3L | 12118311..12118627 | 5..321 | 1585 | 100 | Plus |
| 3L | 28110227 | 3L | 12118688..12118912 | 321..545 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:42 has no hits.
UFO03133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:37 Download gff for
UFO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17153-RA | 64..1178 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:47 Download gff for
UFO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 50..1164 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:27 Download gff for
UFO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp-RA | 50..1164 | 1..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:27 Download gff for
UFO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12118306..12118626 | 1..320 | 99 | -> | Plus |
| 3L | 12118688..12118911 | 321..544 | 100 | -> | Plus |
| 3L | 12118972..12119541 | 545..1112 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:47 Download gff for
UFO03133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12111406..12111726 | 1..320 | 99 | -> | Plus |
| arm_3L | 12111788..12112011 | 321..544 | 100 | -> | Plus |
| arm_3L | 12112072..12112641 | 545..1112 | 96 | | Plus |
