UFO03134.5prime Sequence
1166 bp (1036 high quality bases) assembled on 2009-02-03
> UFO03134.5prime
CAGTCGACATGGAATTTGGTAAAAAAAGGTATAAGGGTGGTCGGACACCT
TCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTATATC
CACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGTTTG
AACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCCAGA
AGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAAAAC
AGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAAGAG
AGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTTGAT
ATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTCCGA
AGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACATTTC
ATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTCGGA
CTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCAAAG
AGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTACATT
CAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGCTGG
GACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGGAGT
GACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAGATA
AGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTCATTGTT
GATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAACTA
TATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGCGTTA
CATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGCCGAA
GAAACAATTCGTCAAAAATTGGTCGCAAAAACTTGAGGAGCACATTCACA
GCTTCAACTTCCTTTATCATGAAAACATATTTTATTGGATAAAACGGTAA
AGACAGGCTTTCTAGACATTCGTTTGGGCGCGCGCGGGCCAGGTAAGTGG
CATATCCTAATCATATCATATCTATCAACTAGCCTAGAGAATTCGTGGCC
TGACATATGCGTGAAT
UFO03134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RG | 1745 | CG2944-RG | 246..1284 | 9..1044 | 5000 | 99.1 | Plus |
| gus-RL | 1933 | CG2944-RL | 451..1472 | 26..1044 | 4915 | 99.1 | Plus |
| gus-RM | 1525 | CG2944-RM | 165..1183 | 29..1044 | 4900 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121655 | 917..26 | 4415 | 99.9 | Minus |
| 2R | 25286936 | 2R | 5117685..5117802 | 1032..918 | 330 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:53 has no hits.
UFO03134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:07 Download gff for
UFO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RA | 249..1293 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:01 Download gff for
UFO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1290 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:22 Download gff for
UFO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RG | 246..1290 | 9..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:22 Download gff for
UFO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117668..5117802 | 918..1049 | 92 | <- | Minus |
| 2R | 5120763..5121652 | 29..917 | 99 | <- | Minus |
| 2R | 5121983..5122002 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:01 Download gff for
UFO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005173..1005307 | 918..1049 | 92 | <- | Minus |
| arm_2R | 1008268..1009157 | 29..917 | 99 | <- | Minus |
| arm_2R | 1009488..1009507 | 9..28 | 100 | | Minus |
