UFO03135.5prime Sequence
1115 bp (1033 high quality bases) assembled on 2009-02-03
> UFO03135.5prime
CAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCTGGGAGGGC
CAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTGGGCATTAA
GCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTTGCCTTTGG
TGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCGCCGAACAC
CAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTGCGACTTCA
CTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGAGGACAGCA
CGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGGACATGCTC
GTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATGTCCTGCCT
GAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATCCGCTATGC
AAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACGAAAAGTTC
GATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTATGGCGATTT
GGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGATGACTTCA
CGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGACAAAAGAAG
AGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGCAGAGCGGT
TGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCAACTGCAAT
GGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATTTATCGGTG
GACTACAAGGATGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAATTCCAGATGGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGGAGTCCAAGCGGGCTCGATATCAA
ATACGGCCCGGCCTTGCCACTCAATCGCAGTATTGTTGTGTTATTTCACA
TTAGCAATTTCTGGC
UFO03135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg5-RA | 1418 | CG1643-RA | 97..905 | 7..815 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7322556..7322782 | 594..368 | 1135 | 100 | Minus |
| X | 23542271 | X | 7323518..7323674 | 163..7 | 785 | 100 | Minus |
| X | 23542271 | X | 7315135..7315251 | 815..699 | 585 | 100 | Minus |
| X | 23542271 | X | 7323157..7323264 | 368..261 | 540 | 100 | Minus |
| X | 23542271 | X | 7322367..7322472 | 699..594 | 530 | 100 | Minus |
| X | 23542271 | X | 7323343..7323447 | 264..160 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:15 has no hits.
UFO03135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:06 Download gff for
UFO03135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 62..882 | 1..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:05 Download gff for
UFO03135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 92..912 | 1..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:53 Download gff for
UFO03135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg5-RA | 92..912 | 1..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:53 Download gff for
UFO03135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7323520..7323678 | 1..161 | 97 | | Minus |
| X | 7322367..7322472 | 594..699 | 100 | <- | Minus |
| X | 7322557..7322782 | 368..593 | 100 | <- | Minus |
| X | 7323158..7323263 | 262..367 | 100 | <- | Minus |
| X | 7323346..7323445 | 162..261 | 100 | <- | Minus |
| X | 7315128..7315250 | 700..824 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:05 Download gff for
UFO03135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7216400..7216505 | 594..699 | 100 | <- | Minus |
| arm_X | 7209161..7209283 | 700..824 | 96 | <- | Minus |
| arm_X | 7216590..7216815 | 368..593 | 100 | <- | Minus |
| arm_X | 7217191..7217296 | 262..367 | 100 | <- | Minus |
| arm_X | 7217379..7217478 | 162..261 | 100 | <- | Minus |
| arm_X | 7217553..7217711 | 1..161 | 97 | | Minus |
