UFO03136.5prime Sequence
1120 bp (1028 high quality bases) assembled on 2009-02-03
> UFO03136.5prime
CAGTCGACATGTCGCTAACGGTGGAAATTGTTGCCACAAAGCCCTATGAG
GGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGGTTAAGGTTTTCAC
CCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATCTTGGAGGCAAATG
GAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGGAGATGGACGTTTC
TACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTATCCGCTGCCAATGG
CGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTGTCCACCCCTGCCG
TATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGGCATTGTTTTGACT
GCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCGGCATCAAGTTCAA
CTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACCAACCACATCTACA
AGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCGCAACCTGCAGATC
GACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCGCCGGAAAGCCCTT
TACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTGCGCCACATGGAGG
AAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAGTGGCAAAGCCACT
GGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACGGAGTAACTGGCTC
ATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCCACCGAATCATCGG
TGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCTGCATCCTGACCCA
AATCTCACATACGCCAAGGACCTGGTTTGACACTGTCGCCCAGGGAGACT
ATGACATTGGAGCTGCCTTCGATGGAGATGGTGACCGCAACATGATCATT
GGCAGCAAGGCGTTCTTCGTAACTCCCAGCGACTCGCTGGCGGTAATTGC
CCACTACCTGGAGGCCATACCGTACTTCCAAAGAATGGTGTTCAAGGATT
CCCCCCGCAGTATGCCAACTGCATCGCTGGTGGATTTGGTGGGCAAAAGT
TGGGCAAGGAAGTGTTTGGAGGGTTCCAACTGGAATGGGAGATTCTCTCG
GTAATCTCTCATGGAAAGGC
UFO03136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgm-RA | 1843 | CG5165-RA | 39..1136 | 6..1108 | 5195 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16126826..16127561 | 1068..333 | 3415 | 98.8 | Minus |
| 3L | 28110227 | 3L | 16128094..16128343 | 334..85 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 16128411..16128493 | 88..6 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:14 has no hits.
UFO03136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:05 Download gff for
UFO03136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 100..1186 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:56 Download gff for
UFO03136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..1121 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:55 Download gff for
UFO03136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgm-RA | 35..1121 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:55 Download gff for
UFO03136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16126806..16127560 | 334..1091 | 98 | <- | Minus |
| 3L | 16128095..16128341 | 87..333 | 100 | <- | Minus |
| 3L | 16128413..16128497 | 1..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:56 Download gff for
UFO03136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16119906..16120660 | 334..1091 | 98 | <- | Minus |
| arm_3L | 16121195..16121441 | 87..333 | 100 | <- | Minus |
| arm_3L | 16121513..16121597 | 1..86 | 98 | | Minus |
