UFO03143.5prime Sequence
1148 bp (1034 high quality bases) assembled on 2009-02-03
> UFO03143.5prime
CAGTCGACATGCAGCAGGCTTACGCGCAGTACATGCAGCAGTTGACTCTA
CGTTCTACGTTGCCCGGTTCGAACCAATCTGGCTTGCCGCCACCGACTCA
ACCCCTGTTGCCCTCAGTCCCACTGATTGCTGGGCGAAACTTCGGGGAGG
TACAACAAGTGGCAGGAGCAGCTGCTGCCCCAGCGGCACAGGTACCTGCT
GATCCTCAGATTAATGGAGCGCCGCAGAACAGAAATTTTCCCAACATTCA
GGAGGAACCGGAAATGCACGACTGGCTGGATAGTTTCTTTAGCTTTACGC
GATTGGCCATTTTTGTGACTGTCCTGTACTTTAACTCCTCAGCGCTGCGT
TGTTTACTGGTGGTGCTCATCGCGGGTGCGATTTATCTATATCACATTGG
TGTCCTTCGACGTCGCCGCGAGCGGAACAATAACAACATAAATCGTAACA
ATAATGCTGGCGATGCGGCCGCCTTTGCTGCAGTGCAGCAAATTCAGCGC
ATGATGGATGCGGCCGTGCAGCGGGAGAACAACGATCCCCAGGCGGCCAA
TGAGCCTGGTGCAGTGCCAGCGGCTGGACCTGCTGCTGCTGGTGAACAAG
ATGCAATCGATGCACCTCCGGCTGGGGCTCCCGTTGCTCCAGCATCCGCT
GCTAATCCAGAACCGACTGACGTTTCCGCGGAAGCTGTGGAACCACCAAA
TGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCATCACGTTCT
TCACCTCGCTGCTGCCCGAGGCGCCGGCGCTCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGGCCTGCCACTCATTCGCAGTACTGGT
TGTAATTCATTAAGCATTCTGCGGACATGGAAGCCATCACAAACCGGCAT
GATGAACCTGAATCGCCACCGGCATTAGACCCTGGTGGCTTGGCTATT
UFO03143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Herp-RC | 2560 | CG14536-RC | 1168..1941 | 9..782 | 3870 | 100 | Plus |
| Herp-RA | 2117 | CG14536-RA | 957..1730 | 9..782 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7796933..7797326 | 782..389 | 1970 | 100 | Minus |
| 2L | 23513712 | 2L | 7797397..7797733 | 388..52 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 7798163..7798206 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 653..581 | 122 | 63 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 653..551 | 112 | 58.3 | Minus |
UFO03143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:18 Download gff for
UFO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RB | 892..1665 | 9..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:36 Download gff for
UFO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 957..1730 | 9..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:15 Download gff for
UFO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 957..1730 | 9..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:15 Download gff for
UFO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7796933..7797326 | 389..782 | 100 | <- | Minus |
| 2L | 7797397..7797732 | 53..388 | 100 | <- | Minus |
| 2L | 7798163..7798206 | 9..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:36 Download gff for
UFO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7796933..7797326 | 389..782 | 100 | <- | Minus |
| arm_2L | 7797397..7797732 | 53..388 | 100 | <- | Minus |
| arm_2L | 7798163..7798206 | 9..52 | 100 | | Minus |
