Clone UFO03146 Report

Search the DGRC for UFO03146

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:31
Well:46
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5844-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03146.5prime Sequence

353 bp (249 high quality bases) assembled on 2009-02-03

> UFO03146.5prime
CAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGCAGGTGGGT
CAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCTTCGACAAAAGC
GCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCCACCGAAGA
ACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCATCAATCGA
CCGCAGCAGCGTAATGCCATCGATTTCGCTTACTGCATCGCACCTTTTGC
GACGCCTTCCCCATTTCCAAGGCGAAAACACGTCCCCCGGGGGCGTGCTT
GACGGGGGGGGGGGTTCTTTTTGCCCCGGTTCCGACTCCTGGAAAATAAC
CCC

UFO03146.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 84..419 8..343 1260 92.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12434640 110..336 675 89.5 Plus
3R 32079331 3R 12434242..12434345 8..111 505 99 Plus
Blast to na_te.dros performed on 2014-11-28 19:55:12 has no hits.

UFO03146.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:36 Download gff for UFO03146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 75..344 1..274 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:42 Download gff for UFO03146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 75..344 1..274 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:38 Download gff for UFO03146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 79..348 1..274 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:38 Download gff for UFO03146.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12434235..12434345 1..111 95 -> Plus
3R 12434417..12434608 112..303 91 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:42 Download gff for UFO03146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259957..8260067 1..111 95 -> Plus
arm_3R 8260139..8260330 112..303 91 -> Plus