UFO03147.5prime Sequence
1139 bp (1026 high quality bases) assembled on 2009-02-03
> UFO03147.5prime
CAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACACCCACTGGC
GTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTCATCAATCC
CTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCTCAAGTTCA
ATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAATTGCAACGT
GCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAACATTCGCC
GGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGAACTCGGGC
GCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTCAGAAGCAG
GATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAGTATCTGAA
CGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACC
GTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGT
CGTGGTATTCACTCCAGAGCGATGAAAACGTTCAGTTGCCTCATGGAAAC
GGTGTAACAGGGGTGAAACTATTCCATATTCCACCAGCCTCACCGGTCTT
TTCATTGGCATACGAATCGGGATGAGACCATTCACATCA
UFO03147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9328-RA | 1501 | CG9328-RA | 451..879 | 9..437 | 2100 | 99.3 | Plus |
| CG9328-RB | 1600 | CG9328-RB | 851..1279 | 9..437 | 2100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20813433..20813709 | 161..437 | 1340 | 98.9 | Plus |
| 2L | 23513712 | 2L | 20813206..20813358 | 9..161 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:31 has no hits.
UFO03147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:36 Download gff for
UFO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9328-RB | 835..1267 | 9..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:58 Download gff for
UFO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9328-RB | 851..1283 | 9..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:10 Download gff for
UFO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9328-RB | 851..1283 | 9..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:10 Download gff for
UFO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20813206..20813357 | 9..160 | 100 | -> | Plus |
| 2L | 20813433..20813709 | 161..437 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:58 Download gff for
UFO03147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20813206..20813357 | 9..160 | 100 | -> | Plus |
| arm_2L | 20813433..20813709 | 161..437 | 98 | == | Plus |
