UFO03148.5prime Sequence
1094 bp (1000 high quality bases) assembled on 2009-02-03
> UFO03148.5prime
CAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCTCCGGTTGG
CCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGCAATAACAA
CGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCGCACCATCA
ACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGCCGCTCTTT
GAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGCGAGGAATT
CGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCTGGTCCACG
AGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCACGTTCTTC
AAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTCGAGGGCCT
CAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGTAAAGCAGG
AGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGAACTTTGAG
CCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCCAAGGAGCA
CAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGACGGGAACG
CCAGTTACGATGTACCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCA
TTCTGCGACATGGAGCATCACAAACGGCATGATGACTGATCGCAGCGGCA
TCAGCACTTGTCGCTTGCGTATATATTTGCCCATGGTGAAACGGGGGGCG
AGAGTGTCATATTGGCCACGTTTAATCAACTGTGAAACTCACCAGGATGC
TGAAACGAAACTATTCTCAATAACCTTAGGAAATAGGCCAGGTT
UFO03148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3689-RB | 2225 | CG3689-RB | 239..847 | 9..617 | 3045 | 100 | Plus |
| CG3689-RC | 1177 | CG3689-RC | 239..815 | 9..585 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9411479..9411743 | 155..419 | 1325 | 100 | Plus |
| 3L | 28110227 | 3L | 9411815..9411982 | 418..585 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9411276..9411421 | 9..154 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:00 has no hits.
UFO03148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:35 Download gff for
UFO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-RB | 218..831 | 9..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:43 Download gff for
UFO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-RB | 239..852 | 9..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:23 Download gff for
UFO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3689-RB | 239..852 | 9..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:23 Download gff for
UFO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9412155..9412191 | 586..623 | 92 | == | Plus |
| 3L | 9411276..9411421 | 9..154 | 100 | -> | Plus |
| 3L | 9411479..9411743 | 155..419 | 100 | -> | Plus |
| 3L | 9411817..9411982 | 420..585 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:43 Download gff for
UFO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9404579..9404843 | 155..419 | 100 | -> | Plus |
| arm_3L | 9404917..9405082 | 420..585 | 100 | -> | Plus |
| arm_3L | 9404376..9404521 | 9..154 | 100 | -> | Plus |
| arm_3L | 9405255..9405291 | 586..623 | 92 | == | Plus |
