UFO03149.5prime Sequence
1135 bp (998 high quality bases) assembled on 2009-02-03
> UFO03149.5prime
CAGTCGACATGTCCGTTTCCTCGAACGCCTCATCCGCCTCCAACAAGGAC
AGCGTGGACAGCCCCAGCAGCACCACCAACACGGACAGCTCCGAGCTGAC
GCACATCCTCAATCGGCGCCAGGAGATCATGGAGTCCCAGGAGGCGGGCA
TCGAGGTGCGTCGCACCTACAAAGTGGTCAACGTCTACACCGACTTCCCC
GAGTTCTCCCGTAACCAGATCAAGGACTACCAGAAGACCTTCAATACATA
CGATACGGCTCGTGATGGCTTCTTGGACCTGCAGGAGCTGAAGTTCATGA
TGGAGAAGCTGGGCGCTCCGCAAACCCATCTGGGACTCAAGCAGATGATT
GCCGAGGTGGACGAGGATAACGATGGCAAGATTTCATTCCGAGAGTTCTT
GCTGATCTTCAGGAAGGCCCAGGCCGGGGAACTGGACTCCGATTCTGGGC
TGAATCAGCTGGCCCGCCTCACGGAGGTCGATGTGGAGCAGGTGGGAGTG
AGCGGAGCCAAGAACTTCTTCGAGGCGAAAATTGAGCAACAGCTGCGGAC
GAACAAGTTCCACGACGAGATTCGGGCGGAGCAGGAGGAGCGCCGGCGAG
AGGAGGAGGAGCGGGCCCAGCGGCGTCAGCAGTTCCAGCAGCGGGCAGCG
ATCTTCCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCC
GCCCTGCACTCATCGCAGTACTGTGTAATCATTAGCATTCTGCGACATGA
GCATCACAACGGCATGATGACCTGATCGCAGCGCATCAGTACTTGTCGCT
TGCGTATATATTTGCCATGTGAAACGGGGGGCGAGAGTGTCCATATTGTC
ACGTTAATCAAACTGTGAACTCACCAGATGCTGGAACGAAAACATATTCC
CATACTAGGCAATGGCAGGTTACGTAACGCCCAAC
UFO03149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swip-1-RB | 1860 | CG10641-RB | 371..1021 | 9..659 | 3255 | 100 | Plus |
| Swip-1-RA | 1628 | CG10641-RA | 371..1021 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18978358..18978769 | 659..248 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 18986672..18986910 | 247..9 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:20 has no hits.
UFO03149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:15 Download gff for
UFO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10641-RA | 360..1017 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:19 Download gff for
UFO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swip-1-RA | 364..1021 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:46 Download gff for
UFO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swip-1-RA | 364..1021 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:46 Download gff for
UFO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18978358..18978769 | 248..659 | 100 | <- | Minus |
| 2L | 18986672..18986914 | 1..247 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:19 Download gff for
UFO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18978358..18978769 | 248..659 | 100 | <- | Minus |
| arm_2L | 18986672..18986914 | 1..247 | 98 | | Minus |
