UFO03154.5prime Sequence
1179 bp (1060 high quality bases) assembled on 2009-02-03
> UFO03154.5prime
CAGTCGACATGTCGAAGAACAAGATAAACACAACGTCCGCAACGGCGGCC
AGTGACACGAATCTAATCGAGGTGAAATCGAAGTTCGATGCAGAGTTTCG
GAGGTGGAGCTTCAAGCGAAATGAGGCGGAGCAGAGCTTCGACAAATTCG
CATCCCTCATTGAGCAGCTGCACAAGCTGACCAACATCCAGTTTCTCATA
CTCTACATCGATCCGCGGGACAATGATCTGTTGCCGATTAACAACGACGA
TAACTTCGGCCGGGCCCTGAAAACAGCACGTCCACTTTTACGGGTCATTG
TGCAGCGAAAGGATGATCTTAATGAGTACTCTGGCTTTGGAACGATGAAA
CCGAGAAACCTCATCGGCAGCATACTGATGGGCCATACGCCAGTGAAGAC
AAAGGCGCCATCGATATCCATACCGCACGATTTCCGTCAAGTCTCGGCCA
TTATAGATGTGGATATAGTGCCGGAAACGCATAGAAGAGTGCGGCTACTG
AAGCACGGCAGCGATAAGCCCCTGGGATTCTACATACGGGATGGCACCTC
TGTCAGGGTGACGGCCAGTGGGCTAGAGAAGCAGCCGGGCATTTTTATAT
CCCGTTTGGTTCCGGGCGGTCTGGCCGAAGTACTGGCCTGCTGGCCGTCA
ACGATGAGGTGATCGAGGTAAATGGCATCGAAGTGGCTGGCAAGACTCTG
GATCAAGTCACCGACATGATGGTGGCCAACAGCTCCAATCTGATAATCAC
CGTGAAGCCGGCCAATCAGCGCACACTGACGTCCACACATCGCGGATCCT
TTTCAAGGAACAGCCAGCTGTCCAGTGGGTCACATCACACTAATAATACA
AACACCTCCGACGAGATCGAGCACGACGATCAGGACGATATTGTGGACTT
AACGGGCGTCACCCTCGACGAGAGTCCAACGTCCACGTCAGCCGGCAATC
ACAACCATCAGCGCATTATCCTCATCACCTCGTCGCACACAGCAGCAGCC
TCCATGCGTCCACGATATGGCCAGCGATGTCAAGGATGGAGGCTGCATTT
GGCAAGCTTTCTAGAACAATTCGTTGGCCGCGCGGCCAGGTAGTGGTCAT
AATCATATTCAAATCTAAATCTAATCCACACTAGCCTAGGAGATTCTGCT
AGACCTAGGCTGATTCTCACAATAAAGGT
UFO03154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-6-RB | 2564 | CG5884-RB | 300..1352 | 9..1051 | 5015 | 99.1 | Plus |
| par-6-RA | 3032 | CG5884-RA | 300..1352 | 9..1051 | 5015 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17704667..17705416 | 312..1051 | 3290 | 98.4 | Plus |
| X | 23542271 | X | 17704370..17704604 | 82..316 | 1160 | 99.6 | Plus |
| X | 23542271 | X | 17703651..17703725 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:31 has no hits.
UFO03154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:11 Download gff for
UFO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 318..1382 | 2..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:10 Download gff for
UFO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1359 | 2..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:26 Download gff for
UFO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-6-RA | 295..1359 | 2..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:26 Download gff for
UFO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17704372..17704600 | 84..312 | 100 | -> | Plus |
| X | 17703646..17703725 | 2..83 | 95 | -> | Plus |
| X | 17704668..17705405 | 313..1041 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:10 Download gff for
UFO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17597679..17597758 | 2..83 | 95 | -> | Plus |
| arm_X | 17598405..17598633 | 84..312 | 100 | -> | Plus |
| arm_X | 17598701..17599438 | 313..1041 | 98 | == | Plus |
