UFO03155.5prime Sequence
1183 bp (1054 high quality bases) assembled on 2009-02-03
> UFO03155.5prime
CAGTCGACATGACGACCACATATGTCACTGCGGGTCCAGTGCCCGTCCAG
CAAACCACATACATCACCACTGGACCCCAGCAGACCACGTATATCACCAA
TGGACGCCAACAACAACCACCACCGCCCCCACCACCAACCACGGTGATCA
TCACCACCCAATCGAACAGCCGATGGGCAACCCCTACTCAAACGCAATCT
GGAACAGCAGCTACCCTTCTCTTTGTGTATGCTGGTATGGACATGGCCCA
AGGTCTTGGTTGGAACTTGACTGCCGTTTCCGCCAACACCCTGGAGTTCC
AGTACAGTTGGTTTATTGGCGTTATTATCGGAGCTGTGGTGTCCGCCATT
ACATCAGCATTTCTGCCCAAAATAGTATTTTATGGTCTGGGTGGTGTGAT
GAACCTAATTGACGCCATTATCTTTGTGAGTGCTCCATATGAGTACGAGT
CGATCCTGGCCGCCCGATATGTGGGAGGAGTGGGCATTGGGTTAATCACT
GTGCCATTCCTAATCCACAGCGCAGAGATCGCTTCGAGTACCAACAGAGG
AACCTGCTGTGCATTGGAGCAATATGGTCTGGCATTGGGAGTGGCCATTC
AAGTAATCTACGACTCACAGTGGTCTCAGGGATTGGGCATGACCATCAAT
CGAGTACACGGAATTTTTGGAATCGTTTTTACGGCCATTGCGCTGGGAAG
TGTAGCCATCACGATCGACTCGCCGATCTTCTATATCCGCCAGAACCAGG
AGCAGAAGGCACGTGCCAGTGTGAAGCAGCTAATGGGATCCTATTGGACT
CGAGAGGCTGGAGATCGAGCCTACGACGAGGCAAAGCTATACGTGGTGGA
AGGCAGCGCCCAAGGAGTAGGCGAGCAGCTGGGAGAGTCTATGATGCCCT
TTCTCAGCTGCTGCTCTTCCGCTGCTTCGTTGCTTTCACCTTCTCGGTGC
CACTGTCATATTCAATACTGACACCACGGAGCTGGTGGAGGCACCCTGCA
CTCCTGGCCACGATTATATTTGGACTTCTTCGTCTGATCGGTGCCCTGAT
CCACTTCGCGTTCTGGAACCCGTGGGCCGGAAATTTGTCTCCTACTGGAC
TCATGTGGCATGGCTGGAATAATGGCTGGCATGCGGAGCTCACGGGAATA
CGGGCACTCTCACGATACTTTATGTGGCAGGGT
UFO03155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17930-RA | 1653 | CG17930-RA | 95..1278 | 9..1179 | 5380 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16328439..16329185 | 384..1124 | 3265 | 98.3 | Plus |
| 3R | 32079331 | 3R | 16327943..16328144 | 9..210 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 16328202..16328378 | 208..384 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:51 has no hits.
UFO03155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:10 Download gff for
UFO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 86..1199 | 2..1107 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:25 Download gff for
UFO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..1200 | 2..1107 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:46 Download gff for
UFO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17930-RA | 87..1200 | 2..1107 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:46 Download gff for
UFO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16328205..16328377 | 211..383 | 100 | -> | Plus |
| 3R | 16327935..16328144 | 2..210 | 98 | -> | Plus |
| 3R | 16328439..16329169 | 384..1107 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:25 Download gff for
UFO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12153927..12154099 | 211..383 | 100 | -> | Plus |
| arm_3R | 12153657..12153866 | 2..210 | 98 | -> | Plus |
| arm_3R | 12154161..12154891 | 384..1107 | 98 | == | Plus |
