UFO03157.5prime Sequence
1122 bp (1015 high quality bases) assembled on 2009-02-03
> UFO03157.5prime
CAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCAGGAGAAAA
GACAAGGACGAAGATGGTCGTGCAGAGCAGGAGGATTCCGCAGATCAGGT
GGGCGAGCCGCACAGGAAGCTTTTGCGCCTGGGCGACATCCTTGAAACGA
ACGAAGTGCTCCTGAACGAGGCGTATCAGCAACCGGAACTTACCAAGTGG
CTCCAAACAGCCTGGACGGAGGAGAAGAGCCAAGGGACCAAGGAGACGCA
AACCGGTGCTCAGGTCTTCTCGGATCCCTTTCAAATCTGCCTTCTGCCCG
GCATGCTGGAGAAGGGCCAAAGCCAGGCGCTGGTCGCCGAGATCATCCAG
AAGGTGCAGTGGTCGCGCAAACAGATGGATTTGTATGAGTTCTACCAGAG
CGCCGACCTCTCCAACATGCCCGCTTGCCGACTGTTGACCAACTTCCTGC
AGGTGCTGCGCAAACAAGTGCGTCCCTGGCTGGAGAAGGTTACCAACCTC
AAGCTGGACTATGTGTCCGCCTCCTGCAGCATGTACACCTGCGGCGACTA
TCTGCTCGTGCACGACGATCTGCTTAAGGACCGACAAGTGGCCTTCATTT
ACTATCTATCGCCTTGGGAAGGAGCGGAGGAATGGACGGATGAGCAGGGC
GGATGCCTAGAGATCTTCGGTAGCGACGATCAGTGCTTTCCACAGTTTCC
AGTGCAGCGAAAGATCGCCCCCAAAGACAACCAGTTTGCCTTCTTCAAGG
TGGGCTCGCGCTCCTTCCACCAAGTAGGCGAGGTTACTACATTCGACTAC
CCGCGTCTTACCATAAACGGATGGTTCCACGGCGATACCAATGAGCCTTC
GTGGCCGACTCCCTGCGCGCCTTTCCCGCCTGAATTACCTGCAACCTGAT
GGCCTTATAGGCCACCGCTTGCCTGTTTCTAAACACGTGTATCTAAAGGG
GCCACCCGCCGGAGCATCCAAAGCGGATCGAAAAAACTCCGAGATTTGTT
ATACGAGTCCTCCAGCGAGAGAAATTCGATACCGGTCGCAGCTGTTGCCG
ATCGATACTGATGGCGAAAACGGGACCCGCACGCCACCACTATGATGCTG
ATTGACACGCCTAGGCACAACT
UFO03157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44254-RA | 1826 | CG44254-RA | 101..1213 | 8..1095 | 4915 | 97.3 | Plus |
| PIG-S-RC | 1764 | CG44255-RC | 101..158 | 8..65 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24916534..24917511 | 1029..62 | 4360 | 98.8 | Minus |
| 3R | 32079331 | 3R | 24917709..24917764 | 63..8 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:45 has no hits.
UFO03157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:09 Download gff for
UFO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RA | 73..1146 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:07 Download gff for
UFO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1168 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:03 Download gff for
UFO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44254-RA | 95..1168 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:03 Download gff for
UFO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24916498..24917509 | 64..1058 | 98 | <- | Minus |
| 3R | 24917709..24917770 | 1..63 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:07 Download gff for
UFO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20742220..20743231 | 64..1058 | 98 | <- | Minus |
| arm_3R | 20743431..20743492 | 1..63 | 95 | | Minus |
