UFO03158.5prime Sequence
1112 bp (997 high quality bases) assembled on 2009-02-03
> UFO03158.5prime
CAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTCTGTGCGTC
CTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACGGAGCGCAA
GTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGTTAACTACA
AGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCTCGTCGCCC
GGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAGATTGTGCT
GTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTCGCACACTC
CTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGTGGTTCAGT
GGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAGCACGCTAT
CGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCTGCAGCTGC
GCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGGAGCAGAAC
TACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAGAGCACCAA
CTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTTGGTTTGCA
TGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGGCCAAGAAA
CTGGTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTGTAATTCATTAGCATTCTGCCGACATG
CAGCCATCACAAACGGCATGATGACCTGATCGCAGCGCATCAGCACCTTG
TCCCTTTGCGTTTAATATTTGCCCATGTGAAACGGGGGCGAAGAGTGTCG
TATTGGCCACGTTTAAATCAACTGTGAACTCACCAGGAATGGCGTGAACG
AAACATTCCATA
UFO03158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eca-RA | 946 | CG33104-RA | 98..745 | 9..656 | 3240 | 100 | Plus |
| Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 9..613 | 3010 | 99.8 | Plus |
| p24-2-RB | 3535 | CG33105-RB | 77..681 | 9..613 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9684670..9685185 | 656..141 | 2580 | 100 | Minus |
| 3R | 32079331 | 3R | 9692033..9692505 | 613..141 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 9685247..9685379 | 141..9 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 9692567..9692699 | 141..9 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:23 has no hits.
UFO03158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:17 Download gff for
UFO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eca-RA | 144..800 | 1..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:22 Download gff for
UFO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eca-RA | 89..745 | 1..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:47 Download gff for
UFO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eca-RA | 89..745 | 1..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:47 Download gff for
UFO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9684670..9685184 | 142..656 | 100 | <- | Minus |
| 3R | 9685247..9685387 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:22 Download gff for
UFO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5510392..5510906 | 142..656 | 100 | <- | Minus |
| arm_3R | 5510969..5511109 | 1..141 | 97 | | Minus |
