UFO03160.5prime Sequence
1126 bp (1029 high quality bases) assembled on 2009-02-03
> UFO03160.5prime
CAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCAAGAAGTGG
TCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCGGCGGACGA
GCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAAAAAATTCA
AGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTACGCAAGCAG
TGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAACACACTGGG
CGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGAATGGGAGT
TTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCGACCTGCAC
TCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAATAACCTGGC
CATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCCACTCATGC
TGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGCCCAACGGA
TGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGCCACGGGAA
CAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGCCGAGGCGA
CGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGTGCATGCTG
AGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATGATTGGCGG
CGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGAGGCGACAG
TGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGCCTATCCCG
AAGGCGCGTAAATTGTTAAGGAAACACCATCGCAAAGGTCTCAGCGAAAA
GGAGAAGTATTACAGGCACCGCCGTCGCTACGAGCAGCGAATGGAGAAGC
GTCTGATGGGACTGTGCACCGTGTGGGACACTGCTGAAGCAGTTTGCTCC
CGACATGGATGTCCAGCCACTGTTGGCCCTGGGCAGCGATGTGACGCTCA
GCTCGCCAGCGCCAAGCAGCAATGACGAGGAGAGGAGCGAGGATCTGGAG
GAGACGGAGGAGATCAGAGCTCCAGCAGGAGCAGCACCAAATGCAGCCTG
GGAGCTGGGAGCACACAAAGCCGTGG
UFO03160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8010-RA | 1633 | CG8010-RA | 179..1282 | 7..1108 | 5320 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19267317..19268040 | 866..143 | 3620 | 100 | Minus |
| X | 23542271 | X | 19267016..19267254 | 1097..863 | 935 | 96.7 | Minus |
| X | 23542271 | X | 19268505..19268598 | 142..49 | 470 | 100 | Minus |
| X | 23542271 | X | 19268676..19268718 | 49..7 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:39 has no hits.
UFO03160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:16 Download gff for
UFO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 163..1282 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:32 Download gff for
UFO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 175..1294 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:10 Download gff for
UFO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8010-RA | 175..1294 | 1..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:10 Download gff for
UFO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19267014..19267251 | 866..1097 | 95 | <- | Minus |
| X | 19267318..19268040 | 143..865 | 100 | <- | Minus |
| X | 19268505..19268598 | 49..142 | 100 | <- | Minus |
| X | 19268677..19268722 | 1..48 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:32 Download gff for
UFO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19161047..19161284 | 866..1097 | 95 | <- | Minus |
| arm_X | 19161351..19162073 | 143..865 | 100 | <- | Minus |
| arm_X | 19162538..19162631 | 49..142 | 100 | <- | Minus |
| arm_X | 19162710..19162755 | 1..48 | 93 | | Minus |
