UFO03161.5prime Sequence
1080 bp (1003 high quality bases) assembled on 2009-02-03
> UFO03161.5prime
CAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCCGCTGGCTG
CGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTCATTGGCCT
GATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAAGGAGCAGG
GAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGCAGC
AGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCGCCCAACGT
GGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGAACTGGAGC
AGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTGTGGCAAAC
AATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCATCCACAGTC
GCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGAAACAGTTA
TTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAAAAGCTTTC
AAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAGGAATTGGG
GCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGCGATTATGA
ACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGGATGGTCTG
ATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCACGGCATGAC
AGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGCGCTGAACC
GCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGTCGGAGGCA
GCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTGAGTTTCCG
CCATCCCGAGTCCAGTGTATCCATCTCTTGGAGCTGGTCGATGATCTGCT
GCGCCATTCGATCAGGATGGAGACGATCAGCTACCCTGGAGGATTTTCGA
TCTGATGTGGATGATGACGATGATCTGATGCGAAATCTCTGAATATCGAG
ACTTTGTGAGGACGCGAGGGAGTCAGCGGATCATCGATAAGAATCACGAT
GCAAGGGCGAATCGGGTGAGCTACTGACTA
UFO03161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31475-RB | 2448 | CG31475-RB | 948..2028 | 9..1077 | 4955 | 98.2 | Plus |
| CG31475-RA | 2688 | CG31475-RA | 1188..2268 | 9..1077 | 4955 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19190080..19190576 | 9..505 | 2485 | 100 | Plus |
| 3R | 32079331 | 3R | 19200021..19200605 | 505..1077 | 2175 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 23:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 109..348 | 295 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 177..322 | 173 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 191..338 | 132 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 110..322 | 123 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 284..428 | 116 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 280..331 | 115 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 284..466 | 111 | 59 | Plus |
UFO03161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:06 Download gff for
UFO03161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1179..2269 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:34 Download gff for
UFO03161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1181..2271 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:17 Download gff for
UFO03161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31475-RA | 1181..2271 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:17 Download gff for
UFO03161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19190073..19190576 | 1..505 | 99 | -> | Plus |
| 3R | 19200022..19200608 | 506..1079 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:34 Download gff for
UFO03161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15015795..15016298 | 1..505 | 99 | -> | Plus |
| arm_3R | 15025744..15026330 | 506..1079 | 96 | | Plus |
