UFO03162.5prime Sequence
1122 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03162.5prime
CAGTCGACATGTTTCTGGCCAAGAGCATAGTGTGCCTCGCCCTCCTGGCG
GTGGCTAACGCCCAATTCGACACCAACTACGCCTCCGGTCGTAGTGGAAT
GGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTGCCGAGTGTGAGA
ACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTCTCCCCTGTGAAC
GAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACGTTACCAACCCAT
CTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGCAGTTCGCCAGCA
TGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTACGTGGACGTGGTC
TTCAACCACATGGCCGCCGACGGAGGCACCTACGGCACTGGCGGCAGCAC
CGCCAGCCCCAGCAGCAAGAGCTATCCCGGAGTGCCCTACTCCTCGCTGG
ACTTCAACCCGACCTGCGCCATCAGCAACTACAACGACGCCAACGAGGTG
CGCAACTGCGAGCTGGTCGGTCTGCGCGACCTTAACCAGGGCAACTCCTA
CGTGCAGGACAAGGTGGTCGAGTTCCTGGACCATCTGATTGATCTCGGCG
TGGCCGGATTCCGCGTGGACGCCGCCAAGCACATGTGGCCCGCCGACCTG
GCCGTCATCTATGGCCGCCTCAAGAACCTGAACACCGACCACGGCTTCGC
CTCGGGATCCAAGGCGTACATCGTCCAGGAGGTCATCGACATGGGCGGCG
AGGTCCATCAGCAAGTCCGAGTACACCGGACTGGGCGCCATCACCGAGTT
CCGCCACTCCGACTCCATCGGCAAGGTCTTCCGCGGCAAGGACCAGCTGC
AGTACCTGACCAACTGGGGCACCGCCTGGGGCTTCGCTGCCTCCGACCGC
TCCCTGGTATTCGTCGACACCACGACAATCAGCGCGGACATGGAGCATGA
GGCGCCGACGTTCTGACCTACAGGTGCCCAAGCAGTACAAGATGGCCTTC
TCCTTCATGCTGGCGCCCCCCTTTCGGCCCACCCGCGTGATGTTCTTCTT
CTCCTTTCACGGAACGGATCAGGTCCGTCCACCACGGACGTACAAAATCG
CCTCGGCCAATCTTTCATAAGG
UFO03162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-p-RB | 1668 | CG18730-RB | 33..1138 | 8..1109 | 5080 | 97.7 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..1138 | 8..1109 | 5080 | 97.7 | Plus |
| Amy-d-RA | 1606 | CG17876-RA | 36..1141 | 8..1109 | 4930 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17119222..17120271 | 1056..8 | 4925 | 98.6 | Minus |
| 2R | 25286936 | 2R | 17124799..17125848 | 8..1056 | 4775 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:11 has no hits.
UFO03162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:05 Download gff for
UFO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..1102 | 8..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:25 Download gff for
UFO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..1102 | 8..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:22 Download gff for
UFO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-p-RA | 33..1102 | 8..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:22 Download gff for
UFO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17119202..17120271 | 8..1076 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:25 Download gff for
UFO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13006707..13007776 | 8..1076 | 98 | | Minus |
