UFO03163.5prime Sequence
1124 bp (1027 high quality bases) assembled on 2009-02-03
> UFO03163.5prime
CAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATTGCATGCTC
CTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCCGGTGATTT
TATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGGCGGTAGTC
TGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCC
GTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGA
TAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCT
GCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCACCTTTGGA
ATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTGATGGGAAT
GCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTTGGGACAGT
TTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAA
GGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTA
CAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTCAATACACC
CAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCCAGGAGTGT
TCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTTATCTTCAC
CTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCTGCTGTCCC
AGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGACCCGCTGTG
GTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCTGCCGTGAA
CGTGGCTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCCTGCCGTGC
TTGCTGCCCTGCTCCCGCTGTGGTGCTGCTCATGCTCCCTCAGTCGTCGT
GCCCCAGTGCTCACAGTGCGTCTACACTGCCCAGACCCGTGTGCATTCAC
ACCGCTCCTCTGCCGAACATCCTCATCATGCGCTCCGCCCCGAACTGTAA
GGAGTAACGCTCATCCTTGTCGATCGAACATGCCTCGCCAGAAACTGCCA
TGATGGGGAGTCCACTGACCTCAC
UFO03163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31904-RB | 3572 | CG31904-RB | 2110..3243 | 7..1109 | 4905 | 97.1 | Plus |
| CG31904-RD | 1943 | CG31904-RD | 481..1614 | 7..1109 | 4905 | 97.1 | Plus |
| CG13796-RD | 2711 | CG13796-RD | 444..1114 | 7..677 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7730198..7730560 | 369..7 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7736338..7736700 | 369..7 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7734865..7735206 | 1012..678 | 1365 | 97.4 | Minus |
| 2L | 23513712 | 2L | 7741016..7741357 | 1012..678 | 1365 | 97.4 | Minus |
| 2L | 23513712 | 2L | 7729180..7729357 | 677..500 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 7735320..7735497 | 677..500 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 7729418..7729550 | 502..370 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 7735558..7735690 | 502..370 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:01 has no hits.
UFO03163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:56 Download gff for
UFO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RB | 2090..3132 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:15 Download gff for
UFO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 475..1517 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:20 Download gff for
UFO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31904-RD | 475..1517 | 1..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:20 Download gff for
UFO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7736338..7736702 | 1..369 | 98 | | Minus |
| 2L | 7734865..7735206 | 678..1012 | 97 | <- | Minus |
| 2L | 7735320..7735495 | 502..677 | 100 | <- | Minus |
| 2L | 7735559..7735690 | 370..501 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:15 Download gff for
UFO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7735320..7735495 | 502..677 | 100 | <- | Minus |
| arm_2L | 7735559..7735690 | 370..501 | 100 | <- | Minus |
| arm_2L | 7734865..7735206 | 678..1012 | 97 | <- | Minus |
| arm_2L | 7736338..7736702 | 1..369 | 98 | | Minus |
