UFO03164.5prime Sequence
1131 bp (1018 high quality bases) assembled on 2009-02-03
> UFO03164.5prime
CAGTCGACATGCCCAATTCGTACCAGAGTCCGCAGCTGAACAAGCAGGGC
AATAGCAATAGCACCACCACCAGCAGTACCTCAGTAAGGAGCACCACAGT
GGTGCAACAGCAACATCACCAGCAACAACATCAGCAAATCAAGCCAAGTA
TTGTGGAAACCCCGGCGACACCACAGCCACAAGTTCCGCCCGAAGACGAG
ATACCCCACAACATAGTGTTCAACAATGTGAGCGCCTTTACATCGATGAG
CAGGCGAAATCACGAGGAGGATTCTCACCAGGGTACGCAATCGGGTTCCA
GGGTGAATCGATTGAGCAAGTGCGATTCGTGGAACCAAATTTGCCAGCTG
CAACAGACTGCGGGTCCAAGTCCGGCCAAATACAACCAGCCCGGTTCTCC
AGGCGAACTGAGACGCACCAAATCGGGACACTCACTCGCCGTGCCCAAAC
TCTACGAAGCGGGCATTGATAAGGCCCAGGTCAGCGAGAAACAGCGTACG
GTGGCTGCCTACTTCTCCGGCCAGAAGTCACCAACTGGCGGCCAAGTGGA
GGAGTTACGAACATCGATGACGACAACGACCTCAAGTCGAAAATCGGCCA
TTAATCGCACGAAAACGAGTGAAAAACTTTCGGCGGCAGCTCGAAAATCA
TTGAGTTCGTTGACCACCACATCGAATGGTAACGTTTCCACCGCCGGTTT
GGGCATGGTGGTGCGTGGTGGTGGTGTTGGTGGCATTGGTGGTGGTGCTG
CACTCAGTCGCAGTGCCACCATGCCGCACATCGCGATCTCAATCTGCTGG
ACGAGAGCAATGTGGAGGATGCCTTCGAGCAGCTAATGATGGGTGCCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATTGTCATAATCATAATCATAATCACAACTAGCCTAGAGATCCTGGTC
ATGACTAGTGCTTGGATCCCACATAAAAAACGCCCGGCGCAACGAGCGTT
CTGAACAATCAGATGGAGTTCGGAGTCATTACTGATTCTATCAACAGAAT
CCAGCGAGCTCGATATCAAATAGGCCGGCCTGCCTCATCGCAGGAATGGG
TGTATCATTAGCATTGGCGACTTGGAAGCCT
UFO03164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34417-RU | 17577 | CG34417-RU | 14664..15505 | 7..847 | 4185 | 99.9 | Plus |
| CG34417-RX | 17271 | CG34417-RX | 14393..15234 | 7..847 | 4185 | 99.9 | Plus |
| CG34417-RW | 17173 | CG34417-RW | 14042..14883 | 7..847 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6582507..6583348 | 7..847 | 4160 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6897 | 40..213 | 212 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6895 | 22..182 | 202 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2416 | 30..136 | 201 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2429 | 1..137 | 181 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6916 | 20..137 | 175 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2410 | 25..136 | 174 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1183 | 9..154 | 168 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6844 | 58..182 | 161 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2478 | 30..135 | 158 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2884..2981 | 39..137 | 141 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1135 | 40..137 | 140 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6808 | 105..182 | 137 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2705..2827 | 1..136 | 136 | 62.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1137 | 106..181 | 135 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2408 | 87..182 | 133 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6775 | 87..137 | 133 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2663 | 105..142 | 119 | 83.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 980..1022 | 104..146 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1558 | 105..136 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1593 | 104..150 | 115 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2350 | 105..136 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2637 | 104..144 | 115 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 95..136 | 111 | 73.8 | Plus |
UFO03164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:55 Download gff for
UFO03164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RH | 14649..15497 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:17 Download gff for
UFO03164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RL | 14309..15157 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:33 Download gff for
UFO03164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RW | 14038..14886 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:33 Download gff for
UFO03164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6582503..6583351 | 1..851 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:17 Download gff for
UFO03164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6476536..6477384 | 1..851 | 99 | == | Plus |
