UFO03166.5prime Sequence
1136 bp (1042 high quality bases) assembled on 2009-02-03
> UFO03166.5prime
CAGTCGACATGATAAAGTTTGTCAGACAGAAAAATCGCGAAAATACACTG
AGGGAATCGAAAAATTTTATGCGTAAAAAGCGTGAATCGAATGACTCTGG
CACCGAATCTGATGGTGAACTCCTCGATGTGGAAAACCAACGTCACTTAG
ACGTGGATATGGAAACTAGTGTTGCTGGCCAAAAACCAATAGCTTCTGCA
ATGATGTGTCACCAGCAGACGTCGTCATCCTGCGCCCATCTCATGTACGA
CCAGCACAGTTCCGAGGAGGAGTTGGAGGTGATCAACGGGCCGTCCTCGC
AGGCGGGTCAGCATCCCGGAACGGCGGCCACGGGCTCATCGTGTGCCTCC
CGGATCTCGAATCGCGGATGCACCTCCTCGCTGGACACGGAGGCGCCCTA
CGAGGAGCGGGCCACCACCTCCAACTCGAAGCGTTCTAGCTCCACGCTGA
TGGTGGAGAACCGCAAGCGATCGCTGGCCCACAGCTCCGACGATGAGTTG
CGCAACTCGCTGGAGCCGATATTGACGCCCGTGAATTTTCGCACATCGCC
GCCATTGGAGGCATTCAAGCCAAATCGTAGCCATATGATGTTCCGCTCCA
CAACGCCACTGATATTATCGGAGGCCCGATGTGGCATCGAAAATATTAAA
TTATGTGATAATAGTGTAAACGAGGAGAATGGTGACAACGGCGGTGGCGG
TGGCGCGGCCAATAGCAGTAAGTGCGCCAAGATTGGCGCACTGGCAGGGA
ATGCCAGCGGAACTGTGGCCGCAACCGGAAACGGAAACGGCGGCAACGAG
AATGAGCCGAGTGTGATCAAGGCGTGCAGCAGCTCGCTAAAGATGAGCAA
CAGCAGCCACCACATTTACCAGCCGCAGCCGAAATATAGTTTCCACTACA
ACAGCTCGCGGAGCAGTCCGGCCAGCACCACTGGCCTGGATATGGAGGTG
CGTTCGGTCAGTCGCGGCGAAACTGTCCACTGCGCCATATCGCCAGCGGC
GACCCAGTAACAATGCAGTGGTGCAGCGGGGCGCCCAACAATATCACATC
GTCAGCATCATCATCATCAGCCAAACACGAACCACAATGCTGCAATCGCC
GAATGCGTACGTTACGCGTGTACAAGAACTGAGAAC
UFO03166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reph-RB | 2928 | CG3920-RB | 1068..2165 | 8..1093 | 5155 | 98.6 | Plus |
| Reph-RA | 3750 | CG3920-RA | 187..1211 | 81..1093 | 4790 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3807523..3808107 | 496..1070 | 2500 | 97.9 | Plus |
| 2L | 23513712 | 2L | 3807133..3807461 | 169..497 | 1645 | 100 | Plus |
| 2L | 23513712 | 2L | 3806967..3807058 | 79..170 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 3806749..3806821 | 8..80 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:21 has no hits.
UFO03166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:54 Download gff for
UFO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k16918-RB | 1051..2148 | 8..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:31 Download gff for
UFO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..2165 | 8..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:26 Download gff for
UFO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reph-RB | 1068..2165 | 8..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:26 Download gff for
UFO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3807133..3807461 | 169..497 | 100 | -> | Plus |
| 2L | 3806749..3806821 | 8..80 | 100 | -> | Plus |
| 2L | 3806969..3807056 | 81..168 | 100 | -> | Plus |
| 2L | 3807525..3808132 | 498..1093 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:31 Download gff for
UFO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3807133..3807461 | 169..497 | 100 | -> | Plus |
| arm_2L | 3806749..3806821 | 8..80 | 100 | -> | Plus |
| arm_2L | 3806969..3807056 | 81..168 | 100 | -> | Plus |
| arm_2L | 3807525..3808132 | 498..1093 | 97 | | Plus |
