UFO03167.5prime Sequence
1134 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03167.5prime
CAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTGGTAAATAC
GCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATCCTGTGCTT
CTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAGTGTGGCCC
TGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACAACACCAAT
ACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAATTCCGAGCG
CTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGCCAGTTTCT
TCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCGCCCAGCGC
TATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCCGCTTTGAT
CACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGCCCTTGCCG
TGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATCCGGCCACG
CATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGAATGCTGGG
AACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGATGCTGGCCA
CTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTATCTTCTAT
TTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTACCTATTCTC
GGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGAGCTGAAGT
ACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCGAGAAACTG
GCACCCACGCTCTGAAGGCCATCTTTAGTTCCCTGCCCTTCCTGTCTCTG
CTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCTGCTCATGCA
GATTCCCACGTACATGAAGAAGATCTACCACGTGACATCAAGAAGGTGCG
CTGCTCTCCTCCTACCTACATGGTGATGCTGCTCTCAGCTTCTTTTTCGT
CTGGCTTTCAAAGTGCTCCAAAGATGAGCATGTTCTTTGTCTTCAACCGC
AGATTTTCACAGCATTACATTGAACCCTTATGTCTCTCGCTGATCGCGCT
AGTATGTGCCGGCGGATATTGTTCATTGTGTAAC
UFO03167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)08717-RC | 2337 | CG15095-RC | 338..1465 | 7..1118 | 5045 | 97.4 | Plus |
| l(2)08717-RA | 2048 | CG15095-RA | 338..1465 | 7..1118 | 5045 | 97.4 | Plus |
| l(2)08717-RB | 2999 | CG15095-RB | 1289..2416 | 7..1118 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18798012..18798794 | 1022..247 | 3540 | 98.6 | Minus |
| 2R | 25286936 | 2R | 18799073..18799264 | 248..57 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 18802018..18802068 | 57..7 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:06 has no hits.
UFO03167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:53 Download gff for
UFO03167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RA | 329..1354 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:25 Download gff for
UFO03167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2311 | 1..1022 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:21 Download gff for
UFO03167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)08717-RB | 1286..2311 | 1..1022 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:21 Download gff for
UFO03167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18799073..18799263 | 58..248 | 100 | <- | Minus |
| 2R | 18798012..18798792 | 249..1022 | 98 | <- | Minus |
| 2R | 18802018..18802071 | 1..57 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:25 Download gff for
UFO03167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14685517..14686297 | 249..1022 | 98 | <- | Minus |
| arm_2R | 14686578..14686768 | 58..248 | 100 | <- | Minus |
| arm_2R | 14689523..14689576 | 1..57 | 94 | | Minus |
