UFO03169.5prime Sequence
1142 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03169.5prime
CAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCGCCATTAGC
GCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATCAACTCTGT
GCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAACTTCATCA
TCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTCCATCGAAG
GCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGCCTGTGGGG
CGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTTGGGTCGCG
ACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATGCGGTCTTC
TGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCTGTAATAAT
AATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGACCATGACCA
CACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGCTGGCGGAG
ACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCGGCCAATCA
GGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCATCCGAACT
ACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATATCCCTCAAT
GTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATTTTCACTAC
GATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACGAAGCGCCG
ATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAGCCTCCACC
TCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTGCCCAGTGC
TTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTCGATGCGAA
TTCAAAAGGACCTCAGTCCATACTCCCTGTCATAGCACGCTTCCCACTCG
CACATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGT
GGTCATAATCATATCATAATCATATCATATCCCCACTAGCCTAGGAGAAT
CCTGTTCATGAACTAGGTGCTGATTCTCACCAAATAAAACGCCGGGCGCC
ACCGAGCGTCTGAACAATTCCGAATGATCTGGAGGTATACTG
UFO03169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6282-RD | 3303 | CG6282-RD | 690..1637 | 9..956 | 4695 | 99.8 | Plus |
| CG6282-RC | 3499 | CG6282-RC | 886..1833 | 9..956 | 4695 | 99.8 | Plus |
| CG6282-RB | 3611 | CG6282-RB | 998..1945 | 9..956 | 4695 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8614600..8614810 | 361..571 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 8614867..8615063 | 570..766 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 8610165..8610357 | 9..201 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 8615219..8615408 | 767..956 | 855 | 99 | Plus |
| 3L | 28110227 | 3L | 8613656..8613820 | 199..363 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:53 has no hits.
UFO03169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:52 Download gff for
UFO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RC | 879..1837 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:11 Download gff for
UFO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RB | 991..1949 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:18 Download gff for
UFO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6282-RB | 991..1949 | 1..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:18 Download gff for
UFO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8610158..8610356 | 1..200 | 98 | -> | Plus |
| 3L | 8613658..8613819 | 201..362 | 100 | -> | Plus |
| 3L | 8614602..8614809 | 363..570 | 100 | -> | Plus |
| 3L | 8614868..8615063 | 571..766 | 100 | -> | Plus |
| 3L | 8615219..8615412 | 767..962 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:11 Download gff for
UFO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8607702..8607909 | 363..570 | 100 | -> | Plus |
| arm_3L | 8607968..8608163 | 571..766 | 100 | -> | Plus |
| arm_3L | 8603258..8603456 | 1..200 | 98 | -> | Plus |
| arm_3L | 8606758..8606919 | 201..362 | 100 | -> | Plus |
| arm_3L | 8608319..8608512 | 767..962 | 97 | | Plus |
