UFO03170.5prime Sequence
961 bp (-104 high quality bases) assembled on 2009-02-03
> UFO03170.5prime
CAATCCACATGGCATAACCAGGAGAACAACGAAAATTCCTATTGGGACGC
TGTTGTATTTTCCACTGGCGCGGGAAGGCTTCAATAATTATACCCTTGAT
CTCTCTGCCAATTCTTATTTATGGCTTTCATACCGACATGGCCGATTTCA
AGTGCCTGTGGCTTATTGTTACCATGGCCCTGCTGTGGATCACCGAAACC
CTACCGATATATGTCACGGCATTGTTTCCCCTTGTCTTTTGCCCTCTCCT
TGGTCTTGTGAATGCCTCTATAATCTGCAAACAGTACTTCACCGACACCA
TTGTGGTATTCCTTGGTGGGCTTATTGGGGCCTTGGGAATTGAGTACAGT
AATCTACACACCAAAATTGCCCTGAGGGTCATTCGGATTGTCGGTGGAAG
TCCTAAACGTTTATTCCTAGGCTTGATGAGCGTGAACACGTTTATGGGAT
TGTGGATATCCAGCTCACCCGGAACGGCCATGATGTGCCCCATTGTCAAA
GCGCTGGTCAATGAATTGGATACCAACGAATATTTCCCGTTTATATGACG
CAAGAGGAAGAACCAGTAGAGGAGGGAAAACCACCACATCCGTCGAAGAT
AACAGTAGCCTTCTACGCTGGCATATCCTACGCCTCCTCCATTGGGGGAC
TGGGAACACTGATTGGCACAAGAACGAATCTGGTCTTTAGGGGCATATAC
ACGGAGCGATTTCCCACTTCTACAGTGGAGATTACATTTGCCAACTTTAT
GTTCTACTCGATACCCTTGATGGTGATTGTAAACGTTACTCTGGTTATCA
TAGCTTTCCTCATCACGCACATGGGACTGTTTCGACCAAATAGTAAAGCT
GTAAATCATTGCTGATGCCAACTCAACAGGAAACTGATGGACGATGTTTG
CGACAGCGCCTATGATTAGTTCCTATGAGCTGTCATGATATCAATGTCAT
CTCTTTGCTTT
UFO03170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-2-RB | 1855 | CG33933-RB | 69..1006 | 9..938 | 4040 | 95.9 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 98..1035 | 9..938 | 4040 | 95.9 | Plus |
| CG33934-RE | 4064 | CG33934-RE | 98..1035 | 9..938 | 4040 | 95.9 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 2576..2696 | 477..596 | 205 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20044118..20044326 | 706..910 | 745 | 93.8 | Plus |
| 3R | 32079331 | 3R | 20043283..20043432 | 260..409 | 690 | 97.3 | Plus |
| 3R | 32079331 | 3R | 20043934..20044060 | 580..706 | 605 | 98.4 | Plus |
| 3R | 32079331 | 3R | 20043106..20043219 | 147..260 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 20043624..20043739 | 409..524 | 520 | 96.6 | Plus |
| 3R | 32079331 | 3R | 20042934..20043047 | 31..144 | 510 | 96.5 | Plus |
| 3R | 32079331 | 3R | 20043827..20043875 | 529..577 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:09 has no hits.
UFO03170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:08 Download gff for
UFO03170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33934-RB | 89..1051 | 1..951 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:45 Download gff for
UFO03170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-2-RB | 60..1022 | 1..951 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:58 Download gff for
UFO03170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33934-RE | 89..1051 | 1..951 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:58 Download gff for
UFO03170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20042935..20043050 | 32..146 | 94 | -> | Plus |
| 3R | 20043106..20043219 | 147..260 | 100 | -> | Plus |
| 3R | 20043284..20043432 | 261..409 | 97 | -> | Plus |
| 3R | 20043625..20043739 | 410..524 | 96 | -> | Plus |
| 3R | 20043822..20043877 | 525..579 | 94 | -> | Plus |
| 3R | 20043934..20044059 | 580..705 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:45 Download gff for
UFO03170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15868657..15868772 | 32..146 | 94 | -> | Plus |
| arm_3R | 15868828..15868941 | 147..260 | 100 | -> | Plus |
| arm_3R | 15869006..15869154 | 261..409 | 97 | -> | Plus |
| arm_3R | 15869347..15869461 | 410..524 | 96 | -> | Plus |
| arm_3R | 15869544..15869599 | 525..579 | 94 | -> | Plus |
| arm_3R | 15869656..15869781 | 580..705 | 98 | -> | Plus |
