UFO03171.5prime Sequence
1146 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03171.5prime
CAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACCTGACAACG
GATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCGCTCTCCGA
GATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCACAACCTCGA
CGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAGGCAAGGAC
CACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGCAATTACAG
TAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCTGAGCTACA
TTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTAAGTCGAGC
ACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTGGTGGGATG
TGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAAATCTCTGC
GGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCGACTTTCTG
ATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAAGAGGGTCC
AGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGGTGGCCTAA
GTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGGATCGGTAC
AATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCCCGCCTGCG
ATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCTGTTCGCTG
TGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAGAGGGCTTC
CTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCAGCTCGCAT
TTTCATGGCACTGTTCTTTGTGGCTGCCTACTGCATTCCACTGACCTCCA
TTGTGTACTCCTACTTCTATATACTGAAGGTGGTCTTCACAGCGAGTCGA
ATACAATCGAACAAGGATAAGGCCAAGACGGAGCAGAAGTTGGCCTTCAT
TGGTGGCGGCTTATCATTGGGTTTGGTGGTTCCTGGCCCTGGTCACCGTA
CGCCATTCGTTGCATGATGGGTGTCTTCGGCTGGGAAAAGGCCAATAACG
CCCCACTGGAATCGAAGTAATAATCGGCGCTCCTTTCTTGTCAAGA
UFO03171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 785..1884 | 8..1115 | 5215 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12166366..12166875 | 1081..567 | 2270 | 97.9 | Minus |
| 3L | 28110227 | 3L | 12167238..12167565 | 567..240 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 12168142..12168375 | 241..8 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:02 has no hits.
UFO03171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:07 Download gff for
UFO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 776..1863 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:36 Download gff for
UFO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 776..1863 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:33 Download gff for
UFO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 776..1863 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:33 Download gff for
UFO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12166358..12166874 | 568..1090 | 97 | <- | Minus |
| 3L | 12167238..12167563 | 242..567 | 100 | <- | Minus |
| 3L | 12168142..12168379 | 1..241 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:36 Download gff for
UFO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159458..12159974 | 568..1090 | 97 | <- | Minus |
| arm_3L | 12160338..12160663 | 242..567 | 100 | <- | Minus |
| arm_3L | 12161242..12161479 | 1..241 | 98 | | Minus |
